miRNA display CGI


Results 1 - 20 of 239 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5474 3' -56.3 NC_001798.1 + 140847 0.66 0.903582
Target:  5'- cCAGGu-CGCGGuGACC-GCGcGCCUCCGa -3'
miRNA:   3'- -GUUUuuGCGCC-UUGGuCGC-CGGGGGU- -5'
5474 3' -56.3 NC_001798.1 + 1874 0.66 0.903582
Target:  5'- -uGAGGCgGCGGucgcaggcgccGGCCAGCaGCCCCa- -3'
miRNA:   3'- guUUUUG-CGCC-----------UUGGUCGcCGGGGgu -5'
5474 3' -56.3 NC_001798.1 + 63345 0.66 0.903582
Target:  5'- --cGAugGCc--GCCAG-GGCCCCCGg -3'
miRNA:   3'- guuUUugCGccuUGGUCgCCGGGGGU- -5'
5474 3' -56.3 NC_001798.1 + 121400 0.66 0.903582
Target:  5'- ------gGCGGAugCGGUGggggcgauccuaGCCCCCGu -3'
miRNA:   3'- guuuuugCGCCUugGUCGC------------CGGGGGU- -5'
5474 3' -56.3 NC_001798.1 + 13079 0.66 0.903582
Target:  5'- aGGAGGCGCGGGcCCGGU-GCUCCa- -3'
miRNA:   3'- gUUUUUGCGCCUuGGUCGcCGGGGgu -5'
5474 3' -56.3 NC_001798.1 + 16552 0.66 0.903582
Target:  5'- cCAAAucCGCGu-ACCGGCGGCgCCa- -3'
miRNA:   3'- -GUUUuuGCGCcuUGGUCGCCGgGGgu -5'
5474 3' -56.3 NC_001798.1 + 24009 0.66 0.903582
Target:  5'- --cGGACGCGGAGgCgauggGGUGGCUCCa- -3'
miRNA:   3'- guuUUUGCGCCUUgG-----UCGCCGGGGgu -5'
5474 3' -56.3 NC_001798.1 + 55898 0.66 0.903582
Target:  5'- aCGAGAaccaACGCGGcGACgAGCgcaaaGGCCCCg- -3'
miRNA:   3'- -GUUUU----UGCGCC-UUGgUCG-----CCGGGGgu -5'
5474 3' -56.3 NC_001798.1 + 93198 0.66 0.903582
Target:  5'- --cGAugGCGGucuuuGACgAGCcGCCCCCc -3'
miRNA:   3'- guuUUugCGCC-----UUGgUCGcCGGGGGu -5'
5474 3' -56.3 NC_001798.1 + 93744 0.66 0.903582
Target:  5'- ---cGACGCuGAugCGGCugcgGGCCCgCCAc -3'
miRNA:   3'- guuuUUGCGcCUugGUCG----CCGGG-GGU- -5'
5474 3' -56.3 NC_001798.1 + 103303 0.66 0.903582
Target:  5'- nAAAAAUaGCGGcGCUGGCGGCCgUCu -3'
miRNA:   3'- gUUUUUG-CGCCuUGGUCGCCGGgGGu -5'
5474 3' -56.3 NC_001798.1 + 121747 0.66 0.903582
Target:  5'- uGGGGAUGgGGAA--AGCGGCaCCCCc -3'
miRNA:   3'- gUUUUUGCgCCUUggUCGCCG-GGGGu -5'
5474 3' -56.3 NC_001798.1 + 79963 0.66 0.903582
Target:  5'- -cGGAGCgGCGGcGCCGcGUccgccgccgGGCCCCCGg -3'
miRNA:   3'- guUUUUG-CGCCuUGGU-CG---------CCGGGGGU- -5'
5474 3' -56.3 NC_001798.1 + 153387 0.66 0.902952
Target:  5'- ---cGGCGcCGGAACCGGUcgcggucGGCCCgCu -3'
miRNA:   3'- guuuUUGC-GCCUUGGUCG-------CCGGGgGu -5'
5474 3' -56.3 NC_001798.1 + 5528 0.66 0.901686
Target:  5'- cCGGGuuCGUGGuaaugagauGCCGGCcccgcgcucccguuGGCCCCCGc -3'
miRNA:   3'- -GUUUuuGCGCCu--------UGGUCG--------------CCGGGGGU- -5'
5474 3' -56.3 NC_001798.1 + 52292 0.66 0.901686
Target:  5'- --cGGACGUGGAGCaggaGGCGcuguuucgcgcccuGCCCCUg -3'
miRNA:   3'- guuUUUGCGCCUUGg---UCGC--------------CGGGGGu -5'
5474 3' -56.3 NC_001798.1 + 98058 0.66 0.897183
Target:  5'- uCGAGAACGUGGGGCUccuGCcGCaCCUCAa -3'
miRNA:   3'- -GUUUUUGCGCCUUGGu--CGcCG-GGGGU- -5'
5474 3' -56.3 NC_001798.1 + 59124 0.66 0.897183
Target:  5'- cCAGAGAUGCGcGAACCcccgAGCgauGGCaCCCAc -3'
miRNA:   3'- -GUUUUUGCGC-CUUGG----UCG---CCGgGGGU- -5'
5474 3' -56.3 NC_001798.1 + 5441 0.66 0.897183
Target:  5'- uCAuuAGCGCccGGcGCgGGCGGCUUCCGc -3'
miRNA:   3'- -GUuuUUGCG--CCuUGgUCGCCGGGGGU- -5'
5474 3' -56.3 NC_001798.1 + 134273 0.66 0.897183
Target:  5'- -uGGAGCGCcagacGGGCCGGUGGgCCCUCu -3'
miRNA:   3'- guUUUUGCGc----CUUGGUCGCC-GGGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.