miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5474 5' -57.9 NC_001798.1 + 16065 0.77 0.288221
Target:  5'- gUCGcuGGGGGcGG-CGGGCGUCUGUGGg -3'
miRNA:   3'- aGGU--UUCCCaCCaGCCCGCAGACGCC- -5'
5474 5' -57.9 NC_001798.1 + 148424 0.77 0.288221
Target:  5'- gCCGgggcGGGGGUGGgcaCGGGCGUaagUGCGGg -3'
miRNA:   3'- aGGU----UUCCCACCa--GCCCGCAg--ACGCC- -5'
5474 5' -57.9 NC_001798.1 + 101867 0.76 0.329789
Target:  5'- -gCGGAGGGgGGU-GGGCGUgUGCGGg -3'
miRNA:   3'- agGUUUCCCaCCAgCCCGCAgACGCC- -5'
5474 5' -57.9 NC_001798.1 + 150842 0.73 0.451959
Target:  5'- gCCAGGGGGcgccGGUCGGGuCG-CgGCGGg -3'
miRNA:   3'- aGGUUUCCCa---CCAGCCC-GCaGaCGCC- -5'
5474 5' -57.9 NC_001798.1 + 153539 0.73 0.451959
Target:  5'- gUCAGGGGGUcGGagGGGCGUCaGgGGg -3'
miRNA:   3'- aGGUUUCCCA-CCagCCCGCAGaCgCC- -5'
5474 5' -57.9 NC_001798.1 + 153577 0.73 0.451959
Target:  5'- gUCAGGGGGUcGGagGGGCGUCaGgGGg -3'
miRNA:   3'- aGGUUUCCCA-CCagCCCGCAGaCgCC- -5'
5474 5' -57.9 NC_001798.1 + 153615 0.73 0.451959
Target:  5'- gUCAGGGGGUcGGagGGGCGUCaGgGGg -3'
miRNA:   3'- aGGUUUCCCA-CCagCCCGCAGaCgCC- -5'
5474 5' -57.9 NC_001798.1 + 147501 0.73 0.470052
Target:  5'- cUCCGGGGGG-GGg-GGGCGcCUGCGu -3'
miRNA:   3'- -AGGUUUCCCaCCagCCCGCaGACGCc -5'
5474 5' -57.9 NC_001798.1 + 102031 0.72 0.507296
Target:  5'- ----cGGGGUGGUUGGGCGggggucuccgugUCUGCGu -3'
miRNA:   3'- agguuUCCCACCAGCCCGC------------AGACGCc -5'
5474 5' -57.9 NC_001798.1 + 30924 0.72 0.545738
Target:  5'- gCCGacgguGAGGGcggcgggGGUCGGGCGggggGCGGg -3'
miRNA:   3'- aGGU-----UUCCCa------CCAGCCCGCaga-CGCC- -5'
5474 5' -57.9 NC_001798.1 + 53225 0.71 0.563347
Target:  5'- cCCGGAGGGgcuccucagcgcGGccgUGGGCGUCcUGCGGc -3'
miRNA:   3'- aGGUUUCCCa-----------CCa--GCCCGCAG-ACGCC- -5'
5474 5' -57.9 NC_001798.1 + 26932 0.71 0.565313
Target:  5'- gUCGGGcGGGcggGGUCGGGCGg--GCGGg -3'
miRNA:   3'- aGGUUU-CCCa--CCAGCCCGCagaCGCC- -5'
5474 5' -57.9 NC_001798.1 + 11223 0.71 0.565313
Target:  5'- aCCucuuGGGGGgccGUCGGGCcaCUGCGGg -3'
miRNA:   3'- aGGu---UUCCCac-CAGCCCGcaGACGCC- -5'
5474 5' -57.9 NC_001798.1 + 19056 0.71 0.57517
Target:  5'- aCCuguGGGUGGUCGGG-G-CgGCGGa -3'
miRNA:   3'- aGGuuuCCCACCAGCCCgCaGaCGCC- -5'
5474 5' -57.9 NC_001798.1 + 26689 0.71 0.57517
Target:  5'- --aGAGGGGgaaGGaaUCGGGCGUCUGUGc -3'
miRNA:   3'- aggUUUCCCa--CC--AGCCCGCAGACGCc -5'
5474 5' -57.9 NC_001798.1 + 148368 0.71 0.585066
Target:  5'- cCCAGccAGGGUGaGgaggggCGGGCGUg-GCGGg -3'
miRNA:   3'- aGGUU--UCCCAC-Ca-----GCCCGCAgaCGCC- -5'
5474 5' -57.9 NC_001798.1 + 20869 0.71 0.594994
Target:  5'- uUCCGAcgagcuGGGGaGGaCgGGGCGUCUGCGc -3'
miRNA:   3'- -AGGUU------UCCCaCCaG-CCCGCAGACGCc -5'
5474 5' -57.9 NC_001798.1 + 26817 0.71 0.594994
Target:  5'- -gCGGGcGGG-GGUCGGGCGg--GCGGg -3'
miRNA:   3'- agGUUU-CCCaCCAGCCCGCagaCGCC- -5'
5474 5' -57.9 NC_001798.1 + 26877 0.71 0.594994
Target:  5'- -gCGGGcGGG-GGUCGGGCGg--GCGGg -3'
miRNA:   3'- agGUUU-CCCaCCAGCCCGCagaCGCC- -5'
5474 5' -57.9 NC_001798.1 + 26907 0.71 0.594994
Target:  5'- -gCGGGcGGG-GGUCGGGCGg--GCGGg -3'
miRNA:   3'- agGUUU-CCCaCCAGCCCGCagaCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.