miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5474 5' -57.9 NC_001798.1 + 2571 0.67 0.789019
Target:  5'- gCCGcGGGGcGGg-GGGCGUCcgcGCGGc -3'
miRNA:   3'- aGGUuUCCCaCCagCCCGCAGa--CGCC- -5'
5474 5' -57.9 NC_001798.1 + 4376 0.67 0.806572
Target:  5'- gCCGGcggcggugguGGuGGUGGUgGuGGUGUCgGCGGg -3'
miRNA:   3'- aGGUU----------UC-CCACCAgC-CCGCAGaCGCC- -5'
5474 5' -57.9 NC_001798.1 + 6225 0.66 0.847685
Target:  5'- cCCGGGGGGccGGcCGGGgGgacggGCGGg -3'
miRNA:   3'- aGGUUUCCCa-CCaGCCCgCaga--CGCC- -5'
5474 5' -57.9 NC_001798.1 + 10382 0.67 0.823521
Target:  5'- gUCGucGGG-GGUCGGG-GUCggcacagggGCGGg -3'
miRNA:   3'- aGGUuuCCCaCCAGCCCgCAGa--------CGCC- -5'
5474 5' -57.9 NC_001798.1 + 11171 0.66 0.847685
Target:  5'- aCCAcgauGGGGGcGGUgGGGCGggcCUGCc- -3'
miRNA:   3'- aGGU----UUCCCaCCAgCCCGCa--GACGcc -5'
5474 5' -57.9 NC_001798.1 + 11223 0.71 0.565313
Target:  5'- aCCucuuGGGGGgccGUCGGGCcaCUGCGGg -3'
miRNA:   3'- aGGu---UUCCCac-CAGCCCGcaGACGCC- -5'
5474 5' -57.9 NC_001798.1 + 11654 0.66 0.839808
Target:  5'- gUCCccGGGGgcgggGGUCGGGUcUCgGgGGg -3'
miRNA:   3'- -AGGuuUCCCa----CCAGCCCGcAGaCgCC- -5'
5474 5' -57.9 NC_001798.1 + 11703 0.68 0.770929
Target:  5'- gUCCGugGAGGGgugGGUCGGGaggCUcCGGg -3'
miRNA:   3'- -AGGU--UUCCCa--CCAGCCCgcaGAcGCC- -5'
5474 5' -57.9 NC_001798.1 + 15186 0.67 0.810012
Target:  5'- gUUCGGGGGGUGGgggggcuggcgagcCGGggggaGCGUCcGCGGg -3'
miRNA:   3'- -AGGUUUCCCACCa-------------GCC-----CGCAGaCGCC- -5'
5474 5' -57.9 NC_001798.1 + 16065 0.77 0.288221
Target:  5'- gUCGcuGGGGGcGG-CGGGCGUCUGUGGg -3'
miRNA:   3'- aGGU--UUCCCaCCaGCCCGCAGACGCC- -5'
5474 5' -57.9 NC_001798.1 + 17665 0.67 0.801366
Target:  5'- gUCCAGgagggguaggaucgcGGGGUGGuUCaGGCGUCUcaGCa- -3'
miRNA:   3'- -AGGUU---------------UCCCACC-AGcCCGCAGA--CGcc -5'
5474 5' -57.9 NC_001798.1 + 19056 0.71 0.57517
Target:  5'- aCCuguGGGUGGUCGGG-G-CgGCGGa -3'
miRNA:   3'- aGGuuuCCCACCAGCCCgCaGaCGCC- -5'
5474 5' -57.9 NC_001798.1 + 20869 0.71 0.594994
Target:  5'- uUCCGAcgagcuGGGGaGGaCgGGGCGUCUGCGc -3'
miRNA:   3'- -AGGUU------UCCCaCCaG-CCCGCAGACGCc -5'
5474 5' -57.9 NC_001798.1 + 26689 0.71 0.57517
Target:  5'- --aGAGGGGgaaGGaaUCGGGCGUCUGUGc -3'
miRNA:   3'- aggUUUCCCa--CC--AGCCCGCAGACGCc -5'
5474 5' -57.9 NC_001798.1 + 26817 0.71 0.594994
Target:  5'- -gCGGGcGGG-GGUCGGGCGg--GCGGg -3'
miRNA:   3'- agGUUU-CCCaCCAGCCCGCagaCGCC- -5'
5474 5' -57.9 NC_001798.1 + 26847 0.71 0.594994
Target:  5'- -gCGGGcGGG-GGUCGGGCGg--GCGGg -3'
miRNA:   3'- agGUUU-CCCaCCAGCCCGCagaCGCC- -5'
5474 5' -57.9 NC_001798.1 + 26877 0.71 0.594994
Target:  5'- -gCGGGcGGG-GGUCGGGCGg--GCGGg -3'
miRNA:   3'- agGUUU-CCCaCCAGCCCGCagaCGCC- -5'
5474 5' -57.9 NC_001798.1 + 26907 0.71 0.594994
Target:  5'- -gCGGGcGGG-GGUCGGGCGg--GCGGg -3'
miRNA:   3'- agGUUU-CCCaCCAGCCCGCagaCGCC- -5'
5474 5' -57.9 NC_001798.1 + 26932 0.71 0.565313
Target:  5'- gUCGGGcGGGcggGGUCGGGCGg--GCGGg -3'
miRNA:   3'- aGGUUU-CCCa--CCAGCCCGCagaCGCC- -5'
5474 5' -57.9 NC_001798.1 + 26966 0.71 0.594994
Target:  5'- -gCGGGcGGG-GGUCGGGCGg--GCGGg -3'
miRNA:   3'- agGUUU-CCCaCCAGCCCGCagaCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.