miRNA display CGI


Results 21 - 40 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5475 3' -55.8 NC_001798.1 + 5612 0.71 0.66697
Target:  5'- -gUCCGCGgGCgGCUCCGCCCcaaagggggcgggGCCGCa -3'
miRNA:   3'- gaAGGCGUaUG-UGGGGUGGGa------------UGGCG- -5'
5475 3' -55.8 NC_001798.1 + 5746 0.72 0.616046
Target:  5'- --cCCGCGUcaucccGCGCUCCGCCCcaaagggggcgggGCCGCa -3'
miRNA:   3'- gaaGGCGUA------UGUGGGGUGGGa------------UGGCG- -5'
5475 3' -55.8 NC_001798.1 + 5862 0.67 0.891723
Target:  5'- ----aGCAcugGCGCCCUGCCCggggcCCGCg -3'
miRNA:   3'- gaaggCGUa--UGUGGGGUGGGau---GGCG- -5'
5475 3' -55.8 NC_001798.1 + 7102 0.67 0.891723
Target:  5'- uUUCCuuAaaagGCACCCCAUCCgACgGCa -3'
miRNA:   3'- gAAGGcgUa---UGUGGGGUGGGaUGgCG- -5'
5475 3' -55.8 NC_001798.1 + 7169 0.66 0.927581
Target:  5'- gCUUCCGaCcgACGggcCCCCGCaCCgggGCgGCg -3'
miRNA:   3'- -GAAGGC-GuaUGU---GGGGUG-GGa--UGgCG- -5'
5475 3' -55.8 NC_001798.1 + 8686 0.66 0.916567
Target:  5'- --aCCGCGUGCGCCgCCgucggcGCCUUaggACCGa -3'
miRNA:   3'- gaaGGCGUAUGUGG-GG------UGGGA---UGGCg -5'
5475 3' -55.8 NC_001798.1 + 9008 0.67 0.870709
Target:  5'- --cCCGCAcaggACgGCCCCgagACCC-ACCGCc -3'
miRNA:   3'- gaaGGCGUa---UG-UGGGG---UGGGaUGGCG- -5'
5475 3' -55.8 NC_001798.1 + 9489 0.72 0.630316
Target:  5'- -gUCCGCGUACAgCUCGCUgU-CCGCc -3'
miRNA:   3'- gaAGGCGUAUGUgGGGUGGgAuGGCG- -5'
5475 3' -55.8 NC_001798.1 + 10631 0.67 0.891723
Target:  5'- ---gCGCAUGCACgCCgCAUCCacgACCGUc -3'
miRNA:   3'- gaagGCGUAUGUG-GG-GUGGGa--UGGCG- -5'
5475 3' -55.8 NC_001798.1 + 14184 0.66 0.921641
Target:  5'- --cCCGCGUgggggcaGCACCUCGCCa-ACuCGCg -3'
miRNA:   3'- gaaGGCGUA-------UGUGGGGUGGgaUG-GCG- -5'
5475 3' -55.8 NC_001798.1 + 14806 0.84 0.136699
Target:  5'- --aUCGCcUGCGCCCCGCCCgGCCGCg -3'
miRNA:   3'- gaaGGCGuAUGUGGGGUGGGaUGGCG- -5'
5475 3' -55.8 NC_001798.1 + 15544 0.66 0.910706
Target:  5'- -gUUCGUGUGCccgGCCCCggGCgUUGCCGCc -3'
miRNA:   3'- gaAGGCGUAUG---UGGGG--UGgGAUGGCG- -5'
5475 3' -55.8 NC_001798.1 + 16769 0.75 0.453501
Target:  5'- -gUCCGgGgACACCCgACCC-GCCGCg -3'
miRNA:   3'- gaAGGCgUaUGUGGGgUGGGaUGGCG- -5'
5475 3' -55.8 NC_001798.1 + 17927 0.67 0.896988
Target:  5'- uCUUCCGgGgugaaccccgugGC-CCCCACCUUACcCGUu -3'
miRNA:   3'- -GAAGGCgUa-----------UGuGGGGUGGGAUG-GCG- -5'
5475 3' -55.8 NC_001798.1 + 19016 0.67 0.877933
Target:  5'- -cUCCuGCAUcaagaGCGCCCCGgCCCccACCGg -3'
miRNA:   3'- gaAGG-CGUA-----UGUGGGGU-GGGa-UGGCg -5'
5475 3' -55.8 NC_001798.1 + 19367 0.73 0.589622
Target:  5'- --cCCGCAU-CAUCCCGCCCgcauCCGg -3'
miRNA:   3'- gaaGGCGUAuGUGGGGUGGGau--GGCg -5'
5475 3' -55.8 NC_001798.1 + 21632 0.72 0.609936
Target:  5'- -aUCCGgGUGCgucgguGCCCCGCUC-GCCGCc -3'
miRNA:   3'- gaAGGCgUAUG------UGGGGUGGGaUGGCG- -5'
5475 3' -55.8 NC_001798.1 + 22437 0.66 0.922192
Target:  5'- -cUCCGCGUccuccuccuuuCcCCCCGCCCcGCgCGCc -3'
miRNA:   3'- gaAGGCGUAu----------GuGGGGUGGGaUG-GCG- -5'
5475 3' -55.8 NC_001798.1 + 22842 0.68 0.820562
Target:  5'- --aCCGCcgccCACCCCgaacccggaccgucGCCCcGCCGCg -3'
miRNA:   3'- gaaGGCGuau-GUGGGG--------------UGGGaUGGCG- -5'
5475 3' -55.8 NC_001798.1 + 23311 0.69 0.769354
Target:  5'- --cCCGCcgACACCaCCACCaccaccaccACCGCc -3'
miRNA:   3'- gaaGGCGuaUGUGG-GGUGGga-------UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.