miRNA display CGI


Results 1 - 20 of 252 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5475 3' -55.8 NC_001798.1 + 149 0.69 0.805798
Target:  5'- --cCCGCGggcgcCGCCCCucccCCCgcgcGCCGCg -3'
miRNA:   3'- gaaGGCGUau---GUGGGGu---GGGa---UGGCG- -5'
5475 3' -55.8 NC_001798.1 + 460 0.7 0.711233
Target:  5'- --cCCGCGgcCGCCUCcCCCgcgGCCGCc -3'
miRNA:   3'- gaaGGCGUauGUGGGGuGGGa--UGGCG- -5'
5475 3' -55.8 NC_001798.1 + 547 0.7 0.721139
Target:  5'- --cUCGCAgcaGCCCCuCCCUcCCGCg -3'
miRNA:   3'- gaaGGCGUaugUGGGGuGGGAuGGCG- -5'
5475 3' -55.8 NC_001798.1 + 680 0.67 0.891723
Target:  5'- --cCCGCccgAC-CCCCGCCCgcCCGa -3'
miRNA:   3'- gaaGGCGua-UGuGGGGUGGGauGGCg -5'
5475 3' -55.8 NC_001798.1 + 710 0.67 0.891723
Target:  5'- --cCCGCccgAC-CCCCGCCCgcCCGa -3'
miRNA:   3'- gaaGGCGua-UGuGGGGUGGGauGGCg -5'
5475 3' -55.8 NC_001798.1 + 740 0.67 0.891723
Target:  5'- --cCCGCccgAC-CCCCGCCCgcCCGa -3'
miRNA:   3'- gaaGGCGua-UGuGGGGUGGGauGGCg -5'
5475 3' -55.8 NC_001798.1 + 770 0.67 0.891723
Target:  5'- --cCCGCccgAC-CCCCGCCCgcCCGa -3'
miRNA:   3'- gaaGGCGua-UGuGGGGUGGGauGGCg -5'
5475 3' -55.8 NC_001798.1 + 800 0.67 0.891723
Target:  5'- --cCCGCccgAC-CCCCGCCCgcCCGa -3'
miRNA:   3'- gaaGGCGua-UGuGGGGUGGGauGGCg -5'
5475 3' -55.8 NC_001798.1 + 830 0.67 0.891723
Target:  5'- --cCCGCccgAC-CCCCGCCCgcCCGa -3'
miRNA:   3'- gaaGGCGua-UGuGGGGUGGGauGGCg -5'
5475 3' -55.8 NC_001798.1 + 860 0.67 0.891723
Target:  5'- --cCCGCccgAC-CCCCGCCCgcCCGa -3'
miRNA:   3'- gaaGGCGua-UGuGGGGUGGGauGGCg -5'
5475 3' -55.8 NC_001798.1 + 890 0.67 0.891723
Target:  5'- --cCCGCccgAC-CCCCGCCCgcCCGa -3'
miRNA:   3'- gaaGGCGua-UGuGGGGUGGGauGGCg -5'
5475 3' -55.8 NC_001798.1 + 1162 0.67 0.90084
Target:  5'- --cCCGCGgcgguccccaccaccUccACGCCgCCGCCC-GCCGCg -3'
miRNA:   3'- gaaGGCGU---------------A--UGUGG-GGUGGGaUGGCG- -5'
5475 3' -55.8 NC_001798.1 + 1347 0.68 0.839748
Target:  5'- --cCCGCGca-GCUCCGCCggGCCGCc -3'
miRNA:   3'- gaaGGCGUaugUGGGGUGGgaUGGCG- -5'
5475 3' -55.8 NC_001798.1 + 1406 0.67 0.898281
Target:  5'- --gCCGCAgcgGCGCgCCCAggcCCCaGCgCGCg -3'
miRNA:   3'- gaaGGCGUa--UGUG-GGGU---GGGaUG-GCG- -5'
5475 3' -55.8 NC_001798.1 + 3139 0.68 0.847786
Target:  5'- -cUCCGCGcGCcgGCCgCCGCCaCcACCGCc -3'
miRNA:   3'- gaAGGCGUaUG--UGG-GGUGG-GaUGGCG- -5'
5475 3' -55.8 NC_001798.1 + 3685 0.67 0.884939
Target:  5'- gUUCUGgAgcCACCCCAUcgCCU-CCGCg -3'
miRNA:   3'- gAAGGCgUauGUGGGGUG--GGAuGGCG- -5'
5475 3' -55.8 NC_001798.1 + 3826 0.67 0.898281
Target:  5'- -cUCCGCcucggGCGCCCC-CCagagGCCGg -3'
miRNA:   3'- gaAGGCGua---UGUGGGGuGGga--UGGCg -5'
5475 3' -55.8 NC_001798.1 + 4449 0.78 0.307108
Target:  5'- -gUCCGgGUACGCCCCGCgg-ACCGCg -3'
miRNA:   3'- gaAGGCgUAUGUGGGGUGggaUGGCG- -5'
5475 3' -55.8 NC_001798.1 + 4812 0.66 0.90461
Target:  5'- -cUCCGgcccacCGUGcCACCCgaACCCggGCCGCg -3'
miRNA:   3'- gaAGGC------GUAU-GUGGGg-UGGGa-UGGCG- -5'
5475 3' -55.8 NC_001798.1 + 5345 0.72 0.650701
Target:  5'- --aCCGCAUuauGCgcgGCCCCGCCCcgacgcCCGCg -3'
miRNA:   3'- gaaGGCGUA---UG---UGGGGUGGGau----GGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.