miRNA display CGI


Results 1 - 20 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5475 3' -55.8 NC_001798.1 + 14806 0.84 0.136699
Target:  5'- --aUCGCcUGCGCCCCGCCCgGCCGCg -3'
miRNA:   3'- gaaGGCGuAUGUGGGGUGGGaUGGCG- -5'
5475 3' -55.8 NC_001798.1 + 33737 0.79 0.267046
Target:  5'- --aCCGCAcuCACCCCACCCcgcCCGCa -3'
miRNA:   3'- gaaGGCGUauGUGGGGUGGGau-GGCG- -5'
5475 3' -55.8 NC_001798.1 + 4449 0.78 0.307108
Target:  5'- -gUCCGgGUACGCCCCGCgg-ACCGCg -3'
miRNA:   3'- gaAGGCgUAUGUGGGGUGggaUGGCG- -5'
5475 3' -55.8 NC_001798.1 + 145511 0.78 0.321447
Target:  5'- --gCCGCGcGC-CCCCGCCCgGCCGCc -3'
miRNA:   3'- gaaGGCGUaUGuGGGGUGGGaUGGCG- -5'
5475 3' -55.8 NC_001798.1 + 145469 0.78 0.321447
Target:  5'- --gCCGCGcGC-CCCCGCCCgGCCGCc -3'
miRNA:   3'- gaaGGCGUaUGuGGGGUGGGaUGGCG- -5'
5475 3' -55.8 NC_001798.1 + 145427 0.78 0.321447
Target:  5'- --gCCGCGcGC-CCCCGCCCgGCCGCc -3'
miRNA:   3'- gaaGGCGUaUGuGGGGUGGGaUGGCG- -5'
5475 3' -55.8 NC_001798.1 + 145532 0.78 0.336281
Target:  5'- --nCCGCGcGC-CCCCGCCCgGCCGCc -3'
miRNA:   3'- gaaGGCGUaUGuGGGGUGGGaUGGCG- -5'
5475 3' -55.8 NC_001798.1 + 84999 0.77 0.343884
Target:  5'- ---aCGCGUGCGCCCCGCUCgACCGg -3'
miRNA:   3'- gaagGCGUAUGUGGGGUGGGaUGGCg -5'
5475 3' -55.8 NC_001798.1 + 58037 0.75 0.435401
Target:  5'- -aUCCGCGgccGCACCagCACCCccGCCGCa -3'
miRNA:   3'- gaAGGCGUa--UGUGGg-GUGGGa-UGGCG- -5'
5475 3' -55.8 NC_001798.1 + 123744 0.75 0.4444
Target:  5'- -cUCCGCAgcuaacGCACCCCcggACCCcGCUGCu -3'
miRNA:   3'- gaAGGCGUa-----UGUGGGG---UGGGaUGGCG- -5'
5475 3' -55.8 NC_001798.1 + 74794 0.75 0.4444
Target:  5'- --aCCGCAcgcCGCCCCGCCC--CCGCa -3'
miRNA:   3'- gaaGGCGUau-GUGGGGUGGGauGGCG- -5'
5475 3' -55.8 NC_001798.1 + 16769 0.75 0.453501
Target:  5'- -gUCCGgGgACACCCgACCC-GCCGCg -3'
miRNA:   3'- gaAGGCgUaUGUGGGgUGGGaUGGCG- -5'
5475 3' -55.8 NC_001798.1 + 25147 0.75 0.462703
Target:  5'- --cCCGCGgcCGCCCCuCCCgcggggGCCGCg -3'
miRNA:   3'- gaaGGCGUauGUGGGGuGGGa-----UGGCG- -5'
5475 3' -55.8 NC_001798.1 + 145610 0.74 0.519823
Target:  5'- --gCCGCG-ACcccgACCCCGCCCcACCGCc -3'
miRNA:   3'- gaaGGCGUaUG----UGGGGUGGGaUGGCG- -5'
5475 3' -55.8 NC_001798.1 + 54839 0.74 0.519823
Target:  5'- --gCCGCcgACACCaCCGCCgCcGCCGCc -3'
miRNA:   3'- gaaGGCGuaUGUGG-GGUGG-GaUGGCG- -5'
5475 3' -55.8 NC_001798.1 + 146225 0.74 0.519823
Target:  5'- -cUCCGCGagucccgACGCCCCcCCCccGCCGCc -3'
miRNA:   3'- gaAGGCGUa------UGUGGGGuGGGa-UGGCG- -5'
5475 3' -55.8 NC_001798.1 + 81806 0.74 0.525693
Target:  5'- -gUCCGCcgGCAcuCCCCGCCCcggucgccccgucGCCGCu -3'
miRNA:   3'- gaAGGCGuaUGU--GGGGUGGGa------------UGGCG- -5'
5475 3' -55.8 NC_001798.1 + 127439 0.74 0.528638
Target:  5'- --gCUGCGUucuGCACCCCGCCCUcuuugucaacucgGCCGa -3'
miRNA:   3'- gaaGGCGUA---UGUGGGGUGGGA-------------UGGCg -5'
5475 3' -55.8 NC_001798.1 + 25185 0.73 0.549414
Target:  5'- --cCCGCcgACGCCgCCGCCgCgGCCGCc -3'
miRNA:   3'- gaaGGCGuaUGUGG-GGUGG-GaUGGCG- -5'
5475 3' -55.8 NC_001798.1 + 28239 0.73 0.549414
Target:  5'- --gCCGCcUGCcCCCCGCCgCcGCCGCg -3'
miRNA:   3'- gaaGGCGuAUGuGGGGUGG-GaUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.