miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5475 5' -58.9 NC_001798.1 + 27458 0.66 0.834872
Target:  5'- gGCACagccugcuaguCCCCGuCCUgccGCGCGggGgcggGCGCGGg -3'
miRNA:   3'- -CGUG-----------GGGGC-GGA---UGCGCa-Ca---UGCGCU- -5'
5475 5' -58.9 NC_001798.1 + 23079 0.66 0.834872
Target:  5'- uCGCCCCCcCCggaGCGCGacgGCGCGc -3'
miRNA:   3'- cGUGGGGGcGGa--UGCGCacaUGCGCu -5'
5475 5' -58.9 NC_001798.1 + 147499 0.66 0.834068
Target:  5'- -gGCUCCggggggggggggCGCCUGCGUGUGUcucgugugagagaGCGCGc -3'
miRNA:   3'- cgUGGGG------------GCGGAUGCGCACA-------------UGCGCu -5'
5475 5' -58.9 NC_001798.1 + 63677 0.66 0.826753
Target:  5'- cGCACCCgCGCCUccaGCcaGUccaccuugACGCGAa -3'
miRNA:   3'- -CGUGGGgGCGGAug-CGcaCA--------UGCGCU- -5'
5475 5' -58.9 NC_001798.1 + 82086 0.66 0.826753
Target:  5'- cCACCCCggCGCCUcACGCGccc-CGCGGu -3'
miRNA:   3'- cGUGGGG--GCGGA-UGCGCacauGCGCU- -5'
5475 5' -58.9 NC_001798.1 + 19492 0.66 0.826753
Target:  5'- cGgGCCCCCGCUg--GCc-GUugGCGAc -3'
miRNA:   3'- -CgUGGGGGCGGaugCGcaCAugCGCU- -5'
5475 5' -58.9 NC_001798.1 + 42140 0.66 0.826753
Target:  5'- --gUCCCCGCCcAgGCuGUGgaggACGCGGa -3'
miRNA:   3'- cguGGGGGCGGaUgCG-CACa---UGCGCU- -5'
5475 5' -58.9 NC_001798.1 + 67337 0.66 0.826753
Target:  5'- cCAUCCCCGCCggcUGCGaCGUuugagauCGCGAc -3'
miRNA:   3'- cGUGGGGGCGG---AUGC-GCAcau----GCGCU- -5'
5475 5' -58.9 NC_001798.1 + 33267 0.66 0.818468
Target:  5'- gGC-UCCCUGUCUugGUGgGUGgGCGGg -3'
miRNA:   3'- -CGuGGGGGCGGAugCGCaCAUgCGCU- -5'
5475 5' -58.9 NC_001798.1 + 123438 0.66 0.818468
Target:  5'- gGCGCCCCCcCCgACGCGc--GCGCc- -3'
miRNA:   3'- -CGUGGGGGcGGaUGCGCacaUGCGcu -5'
5475 5' -58.9 NC_001798.1 + 1416 0.66 0.818468
Target:  5'- cGCGCCCagGCCccaGCGCGcGcagGCGCGGu -3'
miRNA:   3'- -CGUGGGggCGGa--UGCGCaCa--UGCGCU- -5'
5475 5' -58.9 NC_001798.1 + 150896 0.66 0.818468
Target:  5'- cGCACCgCCGCCccCGCGccgGgGCGCu- -3'
miRNA:   3'- -CGUGGgGGCGGauGCGCa--CaUGCGcu -5'
5475 5' -58.9 NC_001798.1 + 9640 0.66 0.81763
Target:  5'- aGCACCgCCCcgaggcgcagcggGCCgcGCGCGgaggGCGCGGg -3'
miRNA:   3'- -CGUGG-GGG-------------CGGa-UGCGCaca-UGCGCU- -5'
5475 5' -58.9 NC_001798.1 + 59455 0.66 0.810023
Target:  5'- cGCACCCCgcgUGCCcggGCGCG-GUGagGCGu -3'
miRNA:   3'- -CGUGGGG---GCGGa--UGCGCaCAUg-CGCu -5'
5475 5' -58.9 NC_001798.1 + 109579 0.66 0.810023
Target:  5'- aGCGCggCCCGCCUgaucgACGCccUGUACGcCGAg -3'
miRNA:   3'- -CGUGg-GGGCGGA-----UGCGc-ACAUGC-GCU- -5'
5475 5' -58.9 NC_001798.1 + 148015 0.66 0.810023
Target:  5'- gGCGCCCguCC-CCUuccucuacCGCGUGgGCGCGGg -3'
miRNA:   3'- -CGUGGG--GGcGGAu-------GCGCACaUGCGCU- -5'
5475 5' -58.9 NC_001798.1 + 25031 0.66 0.810023
Target:  5'- cCGCgCCCGCCUcCGCGccgcgGgagGCGCGc -3'
miRNA:   3'- cGUGgGGGCGGAuGCGCa----Ca--UGCGCu -5'
5475 5' -58.9 NC_001798.1 + 121441 0.66 0.80917
Target:  5'- cGCACCCggaccucCUGCC-GCGCGUccccaGCGCGGg -3'
miRNA:   3'- -CGUGGG-------GGCGGaUGCGCAca---UGCGCU- -5'
5475 5' -58.9 NC_001798.1 + 5356 0.66 0.801426
Target:  5'- cGCGgCCCCGCCccgACGCcc--GCGCGu -3'
miRNA:   3'- -CGUgGGGGCGGa--UGCGcacaUGCGCu -5'
5475 5' -58.9 NC_001798.1 + 149731 0.66 0.801426
Target:  5'- -gGCCCCCGCg-GCGCagcaGCGCGGg -3'
miRNA:   3'- cgUGGGGGCGgaUGCGcacaUGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.