miRNA display CGI


Results 41 - 60 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5475 5' -58.9 NC_001798.1 + 120233 0.67 0.765673
Target:  5'- -gGCCCCCGCCgaggccaggAUGCGgugcaucucgGUAUGCa- -3'
miRNA:   3'- cgUGGGGGCGGa--------UGCGCa---------CAUGCGcu -5'
5475 5' -58.9 NC_001798.1 + 147085 0.67 0.765673
Target:  5'- cCGCCCCCuccggcGCC-GCGCGUu--CGCGAa -3'
miRNA:   3'- cGUGGGGG------CGGaUGCGCAcauGCGCU- -5'
5475 5' -58.9 NC_001798.1 + 32074 0.67 0.764754
Target:  5'- cGCGCCCCCGUCg--GCGUcuccgucgucccaGgcCGCGGu -3'
miRNA:   3'- -CGUGGGGGCGGaugCGCA-------------CauGCGCU- -5'
5475 5' -58.9 NC_001798.1 + 100169 0.67 0.756435
Target:  5'- uCGCCUCCGCCaccgucggccgGCGgGUGaGCGCGc -3'
miRNA:   3'- cGUGGGGGCGGa----------UGCgCACaUGCGCu -5'
5475 5' -58.9 NC_001798.1 + 32303 0.67 0.747093
Target:  5'- -gGCCCCCGCgCUGCuGCGc---CGCGGg -3'
miRNA:   3'- cgUGGGGGCG-GAUG-CGCacauGCGCU- -5'
5475 5' -58.9 NC_001798.1 + 17119 0.67 0.747093
Target:  5'- -gGCCgCCCGCgaGCG-GUaGUGCGCGGu -3'
miRNA:   3'- cgUGG-GGGCGgaUGCgCA-CAUGCGCU- -5'
5475 5' -58.9 NC_001798.1 + 43459 0.67 0.747093
Target:  5'- uGCGaCCCCGCagUACGCGggGgcggGCGUGAg -3'
miRNA:   3'- -CGUgGGGGCGg-AUGCGCa-Ca---UGCGCU- -5'
5475 5' -58.9 NC_001798.1 + 54676 0.67 0.737656
Target:  5'- gGCGCgCCCGCU--CGCGgcucaGCGCGAg -3'
miRNA:   3'- -CGUGgGGGCGGauGCGCaca--UGCGCU- -5'
5475 5' -58.9 NC_001798.1 + 136239 0.67 0.737656
Target:  5'- uUACCCCC-----CGCGUGUGCGCGc -3'
miRNA:   3'- cGUGGGGGcggauGCGCACAUGCGCu -5'
5475 5' -58.9 NC_001798.1 + 55707 0.67 0.737656
Target:  5'- --cUCUCCGCCUggACGCGUGUcagaGCGGc -3'
miRNA:   3'- cguGGGGGCGGA--UGCGCACAug--CGCU- -5'
5475 5' -58.9 NC_001798.1 + 31139 0.67 0.737656
Target:  5'- aGCGCCCCgGCgCggGgGCGgcgGUGCGgGGg -3'
miRNA:   3'- -CGUGGGGgCG-Ga-UgCGCa--CAUGCgCU- -5'
5475 5' -58.9 NC_001798.1 + 66159 0.68 0.728132
Target:  5'- uGCAgCCCCCGCUcgACgaGCGUGUuCGgGGu -3'
miRNA:   3'- -CGU-GGGGGCGGa-UG--CGCACAuGCgCU- -5'
5475 5' -58.9 NC_001798.1 + 5016 0.68 0.71853
Target:  5'- cGCugCUCCGCCgacauCGCcuccgaccgggGUGUGCGgGGg -3'
miRNA:   3'- -CGugGGGGCGGau---GCG-----------CACAUGCgCU- -5'
5475 5' -58.9 NC_001798.1 + 38788 0.68 0.71853
Target:  5'- aCACgCCgCGCUcgACGCG-GUugGCGAg -3'
miRNA:   3'- cGUGgGG-GCGGa-UGCGCaCAugCGCU- -5'
5475 5' -58.9 NC_001798.1 + 87168 0.68 0.71853
Target:  5'- uGCugCCCCGCgUgcaGCGCGg--GCGaCGGg -3'
miRNA:   3'- -CGugGGGGCGgA---UGCGCacaUGC-GCU- -5'
5475 5' -58.9 NC_001798.1 + 98512 0.68 0.71853
Target:  5'- cGCGCCCCCGUaggccCGCca-UGCGCGGg -3'
miRNA:   3'- -CGUGGGGGCGgau--GCGcacAUGCGCU- -5'
5475 5' -58.9 NC_001798.1 + 99972 0.68 0.71853
Target:  5'- gGCGCCCagCGCCaACGCGUccGUggaGCGCa- -3'
miRNA:   3'- -CGUGGGg-GCGGaUGCGCA--CA---UGCGcu -5'
5475 5' -58.9 NC_001798.1 + 117664 0.68 0.71853
Target:  5'- uGCaACCCgcggggacgcgCgGCCgGCgGCGUGUACGCGGg -3'
miRNA:   3'- -CG-UGGG-----------GgCGGaUG-CGCACAUGCGCU- -5'
5475 5' -58.9 NC_001798.1 + 138157 0.68 0.71853
Target:  5'- cGCGCCCCCGgguCCUggggGCGCGacc-CGCGGc -3'
miRNA:   3'- -CGUGGGGGC---GGA----UGCGCacauGCGCU- -5'
5475 5' -58.9 NC_001798.1 + 134923 0.68 0.71853
Target:  5'- cCGCCgCCGCCgagucgGCGCGUgaccugGUGCGgGGc -3'
miRNA:   3'- cGUGGgGGCGGa-----UGCGCA------CAUGCgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.