miRNA display CGI


Results 1 - 20 of 364 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5476 3' -55.6 NC_001798.1 + 91010 0.81 0.232562
Target:  5'- aGCgACGCGGCCAGAAgcccucCGGGCCCaCGCGg -3'
miRNA:   3'- aCG-UGUGCUGGUUUU------GCCUGGG-GCGC- -5'
5476 3' -55.6 NC_001798.1 + 73965 0.79 0.287968
Target:  5'- cGCGCGCGGCCGcgggcucCGGGCCgCCGCGc -3'
miRNA:   3'- aCGUGUGCUGGUuuu----GCCUGG-GGCGC- -5'
5476 3' -55.6 NC_001798.1 + 102228 0.79 0.294728
Target:  5'- cGgGCGCGGCuCGGGGCGGGCCUCGCc -3'
miRNA:   3'- aCgUGUGCUG-GUUUUGCCUGGGGCGc -5'
5476 3' -55.6 NC_001798.1 + 54603 0.79 0.30161
Target:  5'- cGCAUAUGGCCGGGGCGc-CCCCGCGc -3'
miRNA:   3'- aCGUGUGCUGGUUUUGCcuGGGGCGC- -5'
5476 3' -55.6 NC_001798.1 + 121059 0.79 0.308615
Target:  5'- aGCGCACGugCGcccGCGGGCCCCGa- -3'
miRNA:   3'- aCGUGUGCugGUuu-UGCCUGGGGCgc -5'
5476 3' -55.6 NC_001798.1 + 93097 0.78 0.322997
Target:  5'- cGCGCGCGacGCCGGGAacaaGGGCCCgGCGg -3'
miRNA:   3'- aCGUGUGC--UGGUUUUg---CCUGGGgCGC- -5'
5476 3' -55.6 NC_001798.1 + 22307 0.78 0.337873
Target:  5'- gGCgGCGCGACCA--ACGGGCCgCCGCc -3'
miRNA:   3'- aCG-UGUGCUGGUuuUGCCUGG-GGCGc -5'
5476 3' -55.6 NC_001798.1 + 51257 0.78 0.344728
Target:  5'- cGCGgACG-CCGGGacagcgccaucacGCGGGCCCCGCGg -3'
miRNA:   3'- aCGUgUGCuGGUUU-------------UGCCUGGGGCGC- -5'
5476 3' -55.6 NC_001798.1 + 52975 0.77 0.361108
Target:  5'- gGCGCGCGACCGGGcUGGGCggCCCGCc -3'
miRNA:   3'- aCGUGUGCUGGUUUuGCCUG--GGGCGc -5'
5476 3' -55.6 NC_001798.1 + 76871 0.77 0.368292
Target:  5'- gUGCugGCGACCcu-GCGGGCcucccugCCCGCGg -3'
miRNA:   3'- -ACGugUGCUGGuuuUGCCUG-------GGGCGC- -5'
5476 3' -55.6 NC_001798.1 + 143388 0.77 0.385433
Target:  5'- cGUGCGCGuCCGGuGCGGuCCCCGCa -3'
miRNA:   3'- aCGUGUGCuGGUUuUGCCuGGGGCGc -5'
5476 3' -55.6 NC_001798.1 + 147048 0.77 0.393779
Target:  5'- gUGCGCccCGGCCGGAGgGGcCCCCGCa -3'
miRNA:   3'- -ACGUGu-GCUGGUUUUgCCuGGGGCGc -5'
5476 3' -55.6 NC_001798.1 + 57706 0.76 0.402241
Target:  5'- gGC-CAUGACCAGAAgagcccCGGcCCCCGCGa -3'
miRNA:   3'- aCGuGUGCUGGUUUU------GCCuGGGGCGC- -5'
5476 3' -55.6 NC_001798.1 + 143822 0.76 0.410817
Target:  5'- gGCGCGCGGCCAGccguUGGAccaCCCCGCc -3'
miRNA:   3'- aCGUGUGCUGGUUuu--GCCU---GGGGCGc -5'
5476 3' -55.6 NC_001798.1 + 2850 0.76 0.419506
Target:  5'- cGCACgGCGGCCAcgGCGG-CCUCGCu -3'
miRNA:   3'- aCGUG-UGCUGGUuuUGCCuGGGGCGc -5'
5476 3' -55.6 NC_001798.1 + 96955 0.76 0.44532
Target:  5'- gUGUGCugGACCAGGcgcuggcGCGGACCgCgGCGg -3'
miRNA:   3'- -ACGUGugCUGGUUU-------UGCCUGG-GgCGC- -5'
5476 3' -55.6 NC_001798.1 + 31900 0.75 0.455341
Target:  5'- gGCGCGgGuCgGAcuCGGGCCCCGCGg -3'
miRNA:   3'- aCGUGUgCuGgUUuuGCCUGGGGCGC- -5'
5476 3' -55.6 NC_001798.1 + 30785 0.75 0.464556
Target:  5'- gGCcgGCACGGCCGuggacuuuaucuGGACGGGCaaCCCGCGg -3'
miRNA:   3'- aCG--UGUGCUGGU------------UUUGCCUG--GGGCGC- -5'
5476 3' -55.6 NC_001798.1 + 46613 0.75 0.473868
Target:  5'- gGCuacgacCACGGCCAGGACGG-UUCCGCGg -3'
miRNA:   3'- aCGu-----GUGCUGGUUUUGCCuGGGGCGC- -5'
5476 3' -55.6 NC_001798.1 + 36627 0.75 0.473868
Target:  5'- gGCGCGCGGCgGccGGGCGGGggcgcgcuuuCCCCGCGu -3'
miRNA:   3'- aCGUGUGCUGgU--UUUGCCU----------GGGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.