miRNA display CGI


Results 1 - 20 of 364 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5476 3' -55.6 NC_001798.1 + 69 0.71 0.707079
Target:  5'- gGCGgGCGGCgGcgGCGGgcgggcggcagggcaGCCCCGCGc -3'
miRNA:   3'- aCGUgUGCUGgUuuUGCC---------------UGGGGCGC- -5'
5476 3' -55.6 NC_001798.1 + 172 0.66 0.938419
Target:  5'- cGCGCGCcGCgGGGcugccuucccGCGGGcgcCCCCGCGc -3'
miRNA:   3'- aCGUGUGcUGgUUU----------UGCCU---GGGGCGC- -5'
5476 3' -55.6 NC_001798.1 + 439 0.68 0.856952
Target:  5'- cGCGCGCcACgGGGcuGCGG-UCCCGCGg -3'
miRNA:   3'- aCGUGUGcUGgUUU--UGCCuGGGGCGC- -5'
5476 3' -55.6 NC_001798.1 + 1135 0.69 0.780309
Target:  5'- gGCuCGCG-CCucGGCGGcguggccaGCCCCGCGg -3'
miRNA:   3'- aCGuGUGCuGGuuUUGCC--------UGGGGCGC- -5'
5476 3' -55.6 NC_001798.1 + 1197 0.71 0.672904
Target:  5'- cGC-CGCGGCCAGcACcGuCCCCGCGc -3'
miRNA:   3'- aCGuGUGCUGGUUuUGcCuGGGGCGC- -5'
5476 3' -55.6 NC_001798.1 + 1370 0.71 0.717008
Target:  5'- cGCGCACGgcgucgcgccccagcGCCAcguAGACGGGCCgCaGCGg -3'
miRNA:   3'- aCGUGUGC---------------UGGU---UUUGCCUGGgG-CGC- -5'
5476 3' -55.6 NC_001798.1 + 1499 0.7 0.761614
Target:  5'- cGCcCGCGcCCGAGGCGGcgGCCCgGCc -3'
miRNA:   3'- aCGuGUGCuGGUUUUGCC--UGGGgCGc -5'
5476 3' -55.6 NC_001798.1 + 1603 0.74 0.512002
Target:  5'- cGCACGCGguACCGc-ACGuuGGCCCCGCGg -3'
miRNA:   3'- aCGUGUGC--UGGUuuUGC--CUGGGGCGC- -5'
5476 3' -55.6 NC_001798.1 + 1709 0.67 0.899353
Target:  5'- -aCACGCGGCCGGAggccagcacgguGCGGcgcaggUCCCGCGc -3'
miRNA:   3'- acGUGUGCUGGUUU------------UGCCu-----GGGGCGC- -5'
5476 3' -55.6 NC_001798.1 + 1760 0.68 0.856952
Target:  5'- aGCGCACGGCgCAcugcacGGCGGgcagcACCUCGCa -3'
miRNA:   3'- aCGUGUGCUG-GUu-----UUGCC-----UGGGGCGc -5'
5476 3' -55.6 NC_001798.1 + 2012 0.69 0.81605
Target:  5'- -cCAgGCGGCCGugGCGGG-CCCGCa -3'
miRNA:   3'- acGUgUGCUGGUuuUGCCUgGGGCGc -5'
5476 3' -55.6 NC_001798.1 + 2167 0.67 0.879133
Target:  5'- cGCGCACGuccuCCGGGuCGGGCaCCUgGCGc -3'
miRNA:   3'- aCGUGUGCu---GGUUUuGCCUG-GGG-CGC- -5'
5476 3' -55.6 NC_001798.1 + 2207 0.69 0.824593
Target:  5'- cGcCGCGCGGCgCA--GCGGGCCCgaggCGCGc -3'
miRNA:   3'- aC-GUGUGCUG-GUuuUGCCUGGG----GCGC- -5'
5476 3' -55.6 NC_001798.1 + 2284 0.74 0.512002
Target:  5'- aGCGCGCGGCCA--GCGaGGCCagCGCGc -3'
miRNA:   3'- aCGUGUGCUGGUuuUGC-CUGGg-GCGC- -5'
5476 3' -55.6 NC_001798.1 + 2405 0.68 0.844371
Target:  5'- gGCG-GCGGCCGAGGgcgccggcguguggcUGGGCCCCgGCGg -3'
miRNA:   3'- aCGUgUGCUGGUUUU---------------GCCUGGGG-CGC- -5'
5476 3' -55.6 NC_001798.1 + 2509 0.68 0.863051
Target:  5'- gGCGCgGCGGCCGcggcggcggcgucGGcggggcggggggcGCGGcCCCCGCGg -3'
miRNA:   3'- aCGUG-UGCUGGU-------------UU-------------UGCCuGGGGCGC- -5'
5476 3' -55.6 NC_001798.1 + 2774 0.69 0.798478
Target:  5'- gGCG-GCGGCgGAGcucagcaggcGCGGGCUCCGCGg -3'
miRNA:   3'- aCGUgUGCUGgUUU----------UGCCUGGGGCGC- -5'
5476 3' -55.6 NC_001798.1 + 2850 0.76 0.419506
Target:  5'- cGCACgGCGGCCAcgGCGG-CCUCGCu -3'
miRNA:   3'- aCGUG-UGCUGGUuuUGCCuGGGGCGc -5'
5476 3' -55.6 NC_001798.1 + 2874 0.66 0.938419
Target:  5'- cUGcCGC-CGGCCAcgcGCaGGuCCCCGCGc -3'
miRNA:   3'- -AC-GUGuGCUGGUuu-UG-CCuGGGGCGC- -5'
5476 3' -55.6 NC_001798.1 + 2982 0.72 0.622046
Target:  5'- gGCgGgGCGGCCGGcccGCGGGCCCCGgGc -3'
miRNA:   3'- aCG-UgUGCUGGUUu--UGCCUGGGGCgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.