miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5476 5' -53.4 NC_001798.1 + 79389 0.75 0.577679
Target:  5'- gGCGCGGGcgcgg--AGUCCGCGCCc -3'
miRNA:   3'- gCGCGCCUcaauaaaUCAGGCGCGGa -5'
5476 5' -53.4 NC_001798.1 + 50568 0.75 0.587984
Target:  5'- aCGCGCGGGGUgggg-GGUgUGUGCCg -3'
miRNA:   3'- -GCGCGCCUCAauaaaUCAgGCGCGGa -5'
5476 5' -53.4 NC_001798.1 + 147233 0.73 0.711947
Target:  5'- aGCGCGGGGgccccgGGgccccgggCCGCGCCg -3'
miRNA:   3'- gCGCGCCUCaauaaaUCa-------GGCGCGGa -5'
5476 5' -53.4 NC_001798.1 + 39625 0.72 0.741979
Target:  5'- gCGCcgGCGGGGUuuuggUGUggAGUCgGCGCCg -3'
miRNA:   3'- -GCG--CGCCUCA-----AUAaaUCAGgCGCGGa -5'
5476 5' -53.4 NC_001798.1 + 80151 0.71 0.780592
Target:  5'- aCGCaGCGGAGUccaugcUGUUc-GUCCaGCGCCUg -3'
miRNA:   3'- -GCG-CGCCUCA------AUAAauCAGG-CGCGGA- -5'
5476 5' -53.4 NC_001798.1 + 31656 0.71 0.793619
Target:  5'- aGCGCGGAcgcggccgGGcCCGCGCCg -3'
miRNA:   3'- gCGCGCCUcaauaaa-UCaGGCGCGGa -5'
5476 5' -53.4 NC_001798.1 + 141487 0.71 0.795456
Target:  5'- cCGCGCGGGGggcugauGUCCGUgGCCc -3'
miRNA:   3'- -GCGCGCCUCaauaaauCAGGCG-CGGa -5'
5476 5' -53.4 NC_001798.1 + 39556 0.71 0.815251
Target:  5'- gGCGcCGGGGccgucc-GUCCGCGCCg -3'
miRNA:   3'- gCGC-GCCUCaauaaauCAGGCGCGGa -5'
5476 5' -53.4 NC_001798.1 + 27547 0.7 0.834216
Target:  5'- gCGCGCGGGGggAgg-GG-CgGCGCCc -3'
miRNA:   3'- -GCGCGCCUCaaUaaaUCaGgCGCGGa -5'
5476 5' -53.4 NC_001798.1 + 153003 0.7 0.864769
Target:  5'- gGCGCGGGGcgGUcgccggggcggAGUCCGgGCCc -3'
miRNA:   3'- gCGCGCCUCaaUAaa---------UCAGGCgCGGa -5'
5476 5' -53.4 NC_001798.1 + 34104 0.69 0.881769
Target:  5'- gCGCGUGGGGgcgg-UGGgcguacgggcccgacCCGCGCCUg -3'
miRNA:   3'- -GCGCGCCUCaauaaAUCa--------------GGCGCGGA- -5'
5476 5' -53.4 NC_001798.1 + 134467 0.69 0.888096
Target:  5'- gGCGCGcGGUUGgcgUGGg-CGCGCCUg -3'
miRNA:   3'- gCGCGCcUCAAUaa-AUCagGCGCGGA- -5'
5476 5' -53.4 NC_001798.1 + 28208 0.69 0.894234
Target:  5'- gGCGcCGGAGgccccgcacgCCGCGCCUg -3'
miRNA:   3'- gCGC-GCCUCaauaaauca-GGCGCGGA- -5'
5476 5' -53.4 NC_001798.1 + 24577 0.69 0.894904
Target:  5'- gCGCGCGGAGgcg---GG-CCGCGUg- -3'
miRNA:   3'- -GCGCGCCUCaauaaaUCaGGCGCGga -5'
5476 5' -53.4 NC_001798.1 + 30834 0.69 0.90018
Target:  5'- cCGCGCucccugucgcugGGGGgacacacGGUCCGCGCCc -3'
miRNA:   3'- -GCGCG------------CCUCaauaaa-UCAGGCGCGGa -5'
5476 5' -53.4 NC_001798.1 + 4567 0.68 0.919738
Target:  5'- gCGCGCauGGAGgg----GGUCCGCGgCg -3'
miRNA:   3'- -GCGCG--CCUCaauaaaUCAGGCGCgGa -5'
5476 5' -53.4 NC_001798.1 + 2340 0.68 0.928042
Target:  5'- gGCGCGGGGaagagcgggUGGUCCGUgagcucgGCCa -3'
miRNA:   3'- gCGCGCCUCaauaa----AUCAGGCG-------CGGa -5'
5476 5' -53.4 NC_001798.1 + 70243 0.68 0.930687
Target:  5'- aGCGCGGAcgagccGgcGUUUcuGUCCGCgGCCa -3'
miRNA:   3'- gCGCGCCU------CaaUAAAu-CAGGCG-CGGa -5'
5476 5' -53.4 NC_001798.1 + 52871 0.67 0.935791
Target:  5'- cCGUGCuGGGGccgcg-GGUCCGCGCg- -3'
miRNA:   3'- -GCGCG-CCUCaauaaaUCAGGCGCGga -5'
5476 5' -53.4 NC_001798.1 + 151840 0.67 0.937764
Target:  5'- gGCGCGGGGcgugaggcgGGacccCCGCGCCg -3'
miRNA:   3'- gCGCGCCUCaauaaa---UCa---GGCGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.