Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5476 | 5' | -53.4 | NC_001798.1 | + | 2340 | 0.68 | 0.928042 |
Target: 5'- gGCGCGGGGaagagcgggUGGUCCGUgagcucgGCCa -3' miRNA: 3'- gCGCGCCUCaauaa----AUCAGGCG-------CGGa -5' |
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5476 | 5' | -53.4 | NC_001798.1 | + | 4567 | 0.68 | 0.919738 |
Target: 5'- gCGCGCauGGAGgg----GGUCCGCGgCg -3' miRNA: 3'- -GCGCG--CCUCaauaaaUCAGGCGCgGa -5' |
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5476 | 5' | -53.4 | NC_001798.1 | + | 11758 | 0.67 | 0.952146 |
Target: 5'- gGCGCGGGGccgaaaagGGaagCUGCGCCg -3' miRNA: 3'- gCGCGCCUCaauaaa--UCa--GGCGCGGa -5' |
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5476 | 5' | -53.4 | NC_001798.1 | + | 17682 | 0.66 | 0.964109 |
Target: 5'- -uCGCGGGGUgGUUcAGgcgucucagcagCCGCGCCUc -3' miRNA: 3'- gcGCGCCUCAaUAAaUCa-----------GGCGCGGA- -5' |
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5476 | 5' | -53.4 | NC_001798.1 | + | 24577 | 0.69 | 0.894904 |
Target: 5'- gCGCGCGGAGgcg---GG-CCGCGUg- -3' miRNA: 3'- -GCGCGCCUCaauaaaUCaGGCGCGga -5' |
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5476 | 5' | -53.4 | NC_001798.1 | + | 26036 | 0.66 | 0.963087 |
Target: 5'- gCGCGUGGAGgccgcgcacgCGCGCCUg -3' miRNA: 3'- -GCGCGCCUCaauaaaucagGCGCGGA- -5' |
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5476 | 5' | -53.4 | NC_001798.1 | + | 26501 | 0.66 | 0.964779 |
Target: 5'- cCGCGCGGGGacgGUgcUGG-CCGCGgCg -3' miRNA: 3'- -GCGCGCCUCaa-UAa-AUCaGGCGCgGa -5' |
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5476 | 5' | -53.4 | NC_001798.1 | + | 27547 | 0.7 | 0.834216 |
Target: 5'- gCGCGCGGGGggAgg-GG-CgGCGCCc -3' miRNA: 3'- -GCGCGCCUCaaUaaaUCaGgCGCGGa -5' |
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5476 | 5' | -53.4 | NC_001798.1 | + | 28208 | 0.69 | 0.894234 |
Target: 5'- gGCGcCGGAGgccccgcacgCCGCGCCUg -3' miRNA: 3'- gCGC-GCCUCaauaaauca-GGCGCGGA- -5' |
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5476 | 5' | -53.4 | NC_001798.1 | + | 30192 | 0.65 | 0.975127 |
Target: 5'- gGCGCGGGGgucccgccucacgccCCGCGCCc -3' miRNA: 3'- gCGCGCCUCaauaaauca------GGCGCGGa -5' |
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5476 | 5' | -53.4 | NC_001798.1 | + | 30834 | 0.69 | 0.90018 |
Target: 5'- cCGCGCucccugucgcugGGGGgacacacGGUCCGCGCCc -3' miRNA: 3'- -GCGCG------------CCUCaauaaa-UCAGGCGCGGa -5' |
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5476 | 5' | -53.4 | NC_001798.1 | + | 31656 | 0.71 | 0.793619 |
Target: 5'- aGCGCGGAcgcggccgGGcCCGCGCCg -3' miRNA: 3'- gCGCGCCUcaauaaa-UCaGGCGCGGa -5' |
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5476 | 5' | -53.4 | NC_001798.1 | + | 34104 | 0.69 | 0.881769 |
Target: 5'- gCGCGUGGGGgcgg-UGGgcguacgggcccgacCCGCGCCUg -3' miRNA: 3'- -GCGCGCCUCaauaaAUCa--------------GGCGCGGA- -5' |
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5476 | 5' | -53.4 | NC_001798.1 | + | 39437 | 0.67 | 0.94065 |
Target: 5'- gCGUGCGGGGg-----GGUCagggacaGCGCCa -3' miRNA: 3'- -GCGCGCCUCaauaaaUCAGg------CGCGGa -5' |
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5476 | 5' | -53.4 | NC_001798.1 | + | 39556 | 0.71 | 0.815251 |
Target: 5'- gGCGcCGGGGccgucc-GUCCGCGCCg -3' miRNA: 3'- gCGC-GCCUCaauaaauCAGGCGCGGa -5' |
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5476 | 5' | -53.4 | NC_001798.1 | + | 39625 | 0.72 | 0.741979 |
Target: 5'- gCGCcgGCGGGGUuuuggUGUggAGUCgGCGCCg -3' miRNA: 3'- -GCG--CGCCUCA-----AUAaaUCAGgCGCGGa -5' |
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5476 | 5' | -53.4 | NC_001798.1 | + | 50568 | 0.75 | 0.587984 |
Target: 5'- aCGCGCGGGGUgggg-GGUgUGUGCCg -3' miRNA: 3'- -GCGCGCCUCAauaaaUCAgGCGCGGa -5' |
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5476 | 5' | -53.4 | NC_001798.1 | + | 51958 | 0.67 | 0.94065 |
Target: 5'- aGCGCgGGAGg-----GG-CCGCGCCc -3' miRNA: 3'- gCGCG-CCUCaauaaaUCaGGCGCGGa -5' |
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5476 | 5' | -53.4 | NC_001798.1 | + | 52871 | 0.67 | 0.935791 |
Target: 5'- cCGUGCuGGGGccgcg-GGUCCGCGCg- -3' miRNA: 3'- -GCGCG-CCUCaauaaaUCAGGCGCGga -5' |
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5476 | 5' | -53.4 | NC_001798.1 | + | 70243 | 0.68 | 0.930687 |
Target: 5'- aGCGCGGAcgagccGgcGUUUcuGUCCGCgGCCa -3' miRNA: 3'- gCGCGCCU------CaaUAAAu-CAGGCG-CGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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