miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5478 5' -55.5 NC_001798.1 + 21713 0.82 0.204695
Target:  5'- cGGUCUCCGCcgcGCAGCCggugugCCCCUGGuGCg -3'
miRNA:   3'- -CCAGAGGUGuu-UGUUGG------GGGGACC-CG- -5'
5478 5' -55.5 NC_001798.1 + 130832 0.79 0.307108
Target:  5'- cGUC-CCGCucAgGACCCCCCUGGuGCa -3'
miRNA:   3'- cCAGaGGUGuuUgUUGGGGGGACC-CG- -5'
5478 5' -55.5 NC_001798.1 + 104143 0.78 0.328803
Target:  5'- cGUCgacgCCAguGGCcGCCCCgCCUGGGCg -3'
miRNA:   3'- cCAGa---GGUguUUGuUGGGG-GGACCCG- -5'
5478 5' -55.5 NC_001798.1 + 39198 0.78 0.336281
Target:  5'- gGGUCUCgGCGucaAACCCCCCcgcuUGGGUg -3'
miRNA:   3'- -CCAGAGgUGUuugUUGGGGGG----ACCCG- -5'
5478 5' -55.5 NC_001798.1 + 137950 0.77 0.395415
Target:  5'- cGGUCcgCCGCGcgcugcucccgcuccAGCGcCCCCgCCUGGGCg -3'
miRNA:   3'- -CCAGa-GGUGU---------------UUGUuGGGG-GGACCCG- -5'
5478 5' -55.5 NC_001798.1 + 84196 0.76 0.426509
Target:  5'- uGGUCugcUCCGCcGugAucgcGCCCCCCgGGGCg -3'
miRNA:   3'- -CCAG---AGGUGuUugU----UGGGGGGaCCCG- -5'
5478 5' -55.5 NC_001798.1 + 102620 0.75 0.500446
Target:  5'- cGGggaUCCACAAAUAACUCCCgUcgccGGGCg -3'
miRNA:   3'- -CCag-AGGUGUUUGUUGGGGGgA----CCCG- -5'
5478 5' -55.5 NC_001798.1 + 82046 0.75 0.500446
Target:  5'- gGGUCcCuCGCcGACAcCCCCCCgGGGCc -3'
miRNA:   3'- -CCAGaG-GUGuUUGUuGGGGGGaCCCG- -5'
5478 5' -55.5 NC_001798.1 + 39567 0.74 0.529621
Target:  5'- cGUCcgUCCGCGccgacgcgggguGGCGACCCCCUugguugUGGGCg -3'
miRNA:   3'- cCAG--AGGUGU------------UUGUUGGGGGG------ACCCG- -5'
5478 5' -55.5 NC_001798.1 + 18579 0.74 0.539487
Target:  5'- cGGg--CCgugugauaGCAAGCAGCCCCCCcGGGUc -3'
miRNA:   3'- -CCagaGG--------UGUUUGUUGGGGGGaCCCG- -5'
5478 5' -55.5 NC_001798.1 + 47384 0.74 0.559397
Target:  5'- aGGgagCCACucccGCGGCCCCCgUGGGUu -3'
miRNA:   3'- -CCagaGGUGuu--UGUUGGGGGgACCCG- -5'
5478 5' -55.5 NC_001798.1 + 132123 0.73 0.609936
Target:  5'- aGGUC-CUGCAGGCGGCCCUgcgCCgccggGGGCc -3'
miRNA:   3'- -CCAGaGGUGUUUGUUGGGG---GGa----CCCG- -5'
5478 5' -55.5 NC_001798.1 + 5598 0.72 0.620121
Target:  5'- aGGUCgccccguuggUCCGCGGGCGGCUccgCCCCaaaggGGGCg -3'
miRNA:   3'- -CCAG----------AGGUGUUUGUUGG---GGGGa----CCCG- -5'
5478 5' -55.5 NC_001798.1 + 123894 0.72 0.620121
Target:  5'- uGGUaC-CCACGGACAcgGCCCCCgaauccgGGGCg -3'
miRNA:   3'- -CCA-GaGGUGUUUGU--UGGGGGga-----CCCG- -5'
5478 5' -55.5 NC_001798.1 + 28175 0.72 0.650701
Target:  5'- ------gGCGAACAGCCCCCCgagcgaGGGCg -3'
miRNA:   3'- ccagaggUGUUUGUUGGGGGGa-----CCCG- -5'
5478 5' -55.5 NC_001798.1 + 53086 0.72 0.654773
Target:  5'- cGGUCUCCgccauGCAAcgccgggcgcgcggcGCGAgCUCCCUGcGGCu -3'
miRNA:   3'- -CCAGAGG-----UGUU---------------UGUUgGGGGGAC-CCG- -5'
5478 5' -55.5 NC_001798.1 + 152226 0.72 0.671027
Target:  5'- gGGUCUgCCGC-GGCGGCCgCUCgGGGCc -3'
miRNA:   3'- -CCAGA-GGUGuUUGUUGGgGGGaCCCG- -5'
5478 5' -55.5 NC_001798.1 + 127896 0.72 0.671027
Target:  5'- gGGUUcCCAUuGGCcccagAGCCCCCCacgUGGGCa -3'
miRNA:   3'- -CCAGaGGUGuUUG-----UUGGGGGG---ACCCG- -5'
5478 5' -55.5 NC_001798.1 + 114062 0.71 0.681147
Target:  5'- uGGccgCUCCuGCccGCGACCCCCC-GGGUu -3'
miRNA:   3'- -CCa--GAGG-UGuuUGUUGGGGGGaCCCG- -5'
5478 5' -55.5 NC_001798.1 + 56593 0.71 0.691227
Target:  5'- aGUCgUCCcccaggaaccagGCAAACGucACCCCCUcGGGCa -3'
miRNA:   3'- cCAG-AGG------------UGUUUGU--UGGGGGGaCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.