miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5478 5' -55.5 NC_001798.1 + 637 0.69 0.823118
Target:  5'- aGGUCagagCCcCA---GACCCCCCgcGGGCg -3'
miRNA:   3'- -CCAGa---GGuGUuugUUGGGGGGa-CCCG- -5'
5478 5' -55.5 NC_001798.1 + 2798 0.67 0.90461
Target:  5'- cGGgCUCCGC-GGCAGCgCCgggCCCaGGGCc -3'
miRNA:   3'- -CCaGAGGUGuUUGUUG-GG---GGGaCCCG- -5'
5478 5' -55.5 NC_001798.1 + 3825 0.69 0.831523
Target:  5'- --cCUCCGCcucGGGC-GCCCCCCagaggccgGGGCg -3'
miRNA:   3'- ccaGAGGUG---UUUGuUGGGGGGa-------CCCG- -5'
5478 5' -55.5 NC_001798.1 + 4079 0.69 0.820562
Target:  5'- cGGUCgCCGCGgggguccgggccggGGCGGgCUcggCCCUGGGCg -3'
miRNA:   3'- -CCAGaGGUGU--------------UUGUUgGG---GGGACCCG- -5'
5478 5' -55.5 NC_001798.1 + 5598 0.72 0.620121
Target:  5'- aGGUCgccccguuggUCCGCGGGCGGCUccgCCCCaaaggGGGCg -3'
miRNA:   3'- -CCAG----------AGGUGUUUGUUGG---GGGGa----CCCG- -5'
5478 5' -55.5 NC_001798.1 + 7410 0.66 0.937646
Target:  5'- aGGgacCCGCGAcccccACGACCCCCaC-GGGUg -3'
miRNA:   3'- -CCagaGGUGUU-----UGUUGGGGG-GaCCCG- -5'
5478 5' -55.5 NC_001798.1 + 7499 0.67 0.90461
Target:  5'- cGGUCcCCu---AC-GCCCCCCUcGGCa -3'
miRNA:   3'- -CCAGaGGuguuUGuUGGGGGGAcCCG- -5'
5478 5' -55.5 NC_001798.1 + 8403 0.66 0.922192
Target:  5'- gGGUuaCUgCACuuGCccCCCCCCggGGGUg -3'
miRNA:   3'- -CCA--GAgGUGuuUGuuGGGGGGa-CCCG- -5'
5478 5' -55.5 NC_001798.1 + 10180 0.68 0.839748
Target:  5'- cGUUcgUCC-CAAACGuCUCCCCggGGGCa -3'
miRNA:   3'- cCAG--AGGuGUUUGUuGGGGGGa-CCCG- -5'
5478 5' -55.5 NC_001798.1 + 10225 0.67 0.877933
Target:  5'- gGGUCUCCAUAugGACcguuACCCCgCgcacgUGGGa -3'
miRNA:   3'- -CCAGAGGUGU--UUGu---UGGGGgG-----ACCCg -5'
5478 5' -55.5 NC_001798.1 + 14422 0.66 0.926522
Target:  5'- aGGUCcgaacggcauaccgaUCCauugagaccaaaacaACAGGCAcGCCCCCCgGcGGCg -3'
miRNA:   3'- -CCAG---------------AGG---------------UGUUUGU-UGGGGGGaC-CCG- -5'
5478 5' -55.5 NC_001798.1 + 16934 0.66 0.937646
Target:  5'- --cCUCCAC-----GCCCCCCgGGGg -3'
miRNA:   3'- ccaGAGGUGuuuguUGGGGGGaCCCg -5'
5478 5' -55.5 NC_001798.1 + 18579 0.74 0.539487
Target:  5'- cGGg--CCgugugauaGCAAGCAGCCCCCCcGGGUc -3'
miRNA:   3'- -CCagaGG--------UGUUUGUUGGGGGGaCCCG- -5'
5478 5' -55.5 NC_001798.1 + 19442 0.66 0.916567
Target:  5'- --aUUCC-CGAugAGCCCUCCUGG-Ca -3'
miRNA:   3'- ccaGAGGuGUUugUUGGGGGGACCcG- -5'
5478 5' -55.5 NC_001798.1 + 21477 0.67 0.877933
Target:  5'- cGUCcCCcCGGcCGGCCCCCC-GGGUc -3'
miRNA:   3'- cCAGaGGuGUUuGUUGGGGGGaCCCG- -5'
5478 5' -55.5 NC_001798.1 + 21713 0.82 0.204695
Target:  5'- cGGUCUCCGCcgcGCAGCCggugugCCCCUGGuGCg -3'
miRNA:   3'- -CCAGAGGUGuu-UGUUGG------GGGGACC-CG- -5'
5478 5' -55.5 NC_001798.1 + 23808 0.67 0.884939
Target:  5'- uGG-C-CCGgGGcCGGCCCCCCgcccccgGGGCg -3'
miRNA:   3'- -CCaGaGGUgUUuGUUGGGGGGa------CCCG- -5'
5478 5' -55.5 NC_001798.1 + 24122 0.69 0.805798
Target:  5'- -aUCUCCggcagcguggcGCGGGCcguGCCCCaCCUGGGg -3'
miRNA:   3'- ccAGAGG-----------UGUUUGu--UGGGG-GGACCCg -5'
5478 5' -55.5 NC_001798.1 + 25684 0.68 0.847786
Target:  5'- cGG-CUCUGCGGGCccGCCacggCCgCCUGGGCg -3'
miRNA:   3'- -CCaGAGGUGUUUGu-UGG----GG-GGACCCG- -5'
5478 5' -55.5 NC_001798.1 + 28175 0.72 0.650701
Target:  5'- ------gGCGAACAGCCCCCCgagcgaGGGCg -3'
miRNA:   3'- ccagaggUGUUUGUUGGGGGGa-----CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.