miRNA display CGI


Results 21 - 40 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5480 5' -60.4 NC_001798.1 + 3884 0.67 0.695952
Target:  5'- aCGCGCcccgggggcggggGGCCGG-CCCCGgGCCacGGCUc -3'
miRNA:   3'- gGUGUG-------------UCGGCCaGGGGUgCGG--CUGG- -5'
5480 5' -60.4 NC_001798.1 + 4027 0.74 0.353066
Target:  5'- gCGuCGCGGCCGGccaCCgCCGCGCgGGCCc -3'
miRNA:   3'- gGU-GUGUCGGCCa--GG-GGUGCGgCUGG- -5'
5480 5' -60.4 NC_001798.1 + 4066 0.68 0.667923
Target:  5'- uCCAgGCGGCCcgcGGUCgCCGCGgggguCCgGGCCg -3'
miRNA:   3'- -GGUgUGUCGG---CCAGgGGUGC-----GG-CUGG- -5'
5480 5' -60.4 NC_001798.1 + 4194 0.66 0.780352
Target:  5'- cCCGCccGCGGCgUGGUCUgCgGCGCUGGCg -3'
miRNA:   3'- -GGUG--UGUCG-GCCAGG-GgUGCGGCUGg -5'
5480 5' -60.4 NC_001798.1 + 5180 0.66 0.780352
Target:  5'- uCCugGCGGCCGcGUCgguagCCGCGCuccguguggaCGAUCg -3'
miRNA:   3'- -GGugUGUCGGC-CAGg----GGUGCG----------GCUGG- -5'
5480 5' -60.4 NC_001798.1 + 5345 0.71 0.47713
Target:  5'- aCCGCAUuauGCgCGG-CCCCGCcCCGACg -3'
miRNA:   3'- -GGUGUGu--CG-GCCaGGGGUGcGGCUGg -5'
5480 5' -60.4 NC_001798.1 + 5374 0.67 0.725455
Target:  5'- cCCGCGCGuCCGcGUCCgUgGCGgCGGCCc -3'
miRNA:   3'- -GGUGUGUcGGC-CAGG-GgUGCgGCUGG- -5'
5480 5' -60.4 NC_001798.1 + 5555 0.75 0.277664
Target:  5'- cCCGCGCucccGuuGG-CCCC-CGCCGGCCc -3'
miRNA:   3'- -GGUGUGu---CggCCaGGGGuGCGGCUGG- -5'
5480 5' -60.4 NC_001798.1 + 5947 0.69 0.570643
Target:  5'- gCACAUaaagGGCCGGcgUCCCgGuCGCCG-CCg -3'
miRNA:   3'- gGUGUG----UCGGCC--AGGGgU-GCGGCuGG- -5'
5480 5' -60.4 NC_001798.1 + 6195 0.66 0.752424
Target:  5'- cCCACuGCAGCCuuaucgcagguacGGUgaCCCGggggGCCGGCCg -3'
miRNA:   3'- -GGUG-UGUCGG-------------CCAg-GGGUg---CGGCUGG- -5'
5480 5' -60.4 NC_001798.1 + 7480 0.71 0.462845
Target:  5'- cCCGCGggcuugccUAGcCCGGUCCCCuACGCCccccucggcagcccgGACCc -3'
miRNA:   3'- -GGUGU--------GUC-GGCCAGGGG-UGCGG---------------CUGG- -5'
5480 5' -60.4 NC_001798.1 + 7631 0.71 0.504481
Target:  5'- aCCGCGCGGaCCGGcCCCCGgagucCcCCGGCUc -3'
miRNA:   3'- -GGUGUGUC-GGCCaGGGGU-----GcGGCUGG- -5'
5480 5' -60.4 NC_001798.1 + 7824 0.66 0.789124
Target:  5'- -gGCGCAGCUGGUUcauaCCCAaugGCUucgGGCCa -3'
miRNA:   3'- ggUGUGUCGGCCAG----GGGUg--CGG---CUGG- -5'
5480 5' -60.4 NC_001798.1 + 9165 0.66 0.747827
Target:  5'- cCCGCGCcgGggggcagggucucugGCgGGUCCCCGCGUgCGuCCg -3'
miRNA:   3'- -GGUGUG--U---------------CGgCCAGGGGUGCG-GCuGG- -5'
5480 5' -60.4 NC_001798.1 + 9576 0.66 0.770563
Target:  5'- gCGC-CAGCaGGUCaugcacgCCCACGCgGACa -3'
miRNA:   3'- gGUGuGUCGgCCAG-------GGGUGCGgCUGg -5'
5480 5' -60.4 NC_001798.1 + 12194 0.68 0.677623
Target:  5'- uCCACGaAGCCcuGGggCCCCACGgccCCGGCa -3'
miRNA:   3'- -GGUGUgUCGG--CCa-GGGGUGC---GGCUGg -5'
5480 5' -60.4 NC_001798.1 + 12665 0.67 0.716003
Target:  5'- gCCAgggUACuGCCGG-CCagCGCGCCGAUg -3'
miRNA:   3'- -GGU---GUGuCGGCCaGGg-GUGCGGCUGg -5'
5480 5' -60.4 NC_001798.1 + 13678 0.7 0.513749
Target:  5'- -aGCAgGGCCGccGUCCCgACGCCGGa- -3'
miRNA:   3'- ggUGUgUCGGC--CAGGGgUGCGGCUgg -5'
5480 5' -60.4 NC_001798.1 + 16198 0.66 0.780352
Target:  5'- aCGCACgGGCCGcccUCCgCaCGCGCCG-CCu -3'
miRNA:   3'- gGUGUG-UCGGCc--AGG-G-GUGCGGCuGG- -5'
5480 5' -60.4 NC_001798.1 + 17082 0.7 0.541948
Target:  5'- uCCACGcCGGUCGGg-UCCACGCCgGACg -3'
miRNA:   3'- -GGUGU-GUCGGCCagGGGUGCGG-CUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.