miRNA display CGI


Results 1 - 20 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5480 5' -60.4 NC_001798.1 + 129 0.7 0.561031
Target:  5'- cCCcCGgAGCCGGccgcUCCCCcgcggGCGCCGcCCc -3'
miRNA:   3'- -GGuGUgUCGGCC----AGGGG-----UGCGGCuGG- -5'
5480 5' -60.4 NC_001798.1 + 205 0.74 0.345646
Target:  5'- cCCGCGCGGCUuuuUUCCCGCGCCcGCCc -3'
miRNA:   3'- -GGUGUGUCGGcc-AGGGGUGCGGcUGG- -5'
5480 5' -60.4 NC_001798.1 + 369 0.68 0.628935
Target:  5'- cCCGCACA--CGGUUCCC-CGCC-ACCc -3'
miRNA:   3'- -GGUGUGUcgGCCAGGGGuGCGGcUGG- -5'
5480 5' -60.4 NC_001798.1 + 444 0.68 0.628935
Target:  5'- gCCACGgGGCugCGGUCCCgCG-GCCG-CCu -3'
miRNA:   3'- -GGUGUgUCG--GCCAGGG-GUgCGGCuGG- -5'
5480 5' -60.4 NC_001798.1 + 473 0.71 0.468176
Target:  5'- cCCcCGCGGCCGccucCCCCGCGCCccGCCc -3'
miRNA:   3'- -GGuGUGUCGGCca--GGGGUGCGGc-UGG- -5'
5480 5' -60.4 NC_001798.1 + 1160 0.72 0.424771
Target:  5'- gCCcCGCGG-CGGUCCCCaccaccuccACGCCG-CCg -3'
miRNA:   3'- -GGuGUGUCgGCCAGGGG---------UGCGGCuGG- -5'
5480 5' -60.4 NC_001798.1 + 1195 0.75 0.310241
Target:  5'- cCCGcCGCGGCCagcaccGUCCCCGCGCggcccgCGGCCg -3'
miRNA:   3'- -GGU-GUGUCGGc-----CAGGGGUGCG------GCUGG- -5'
5480 5' -60.4 NC_001798.1 + 1347 0.74 0.338339
Target:  5'- cCCGCGCAgcuccGCCGGgCCgCCGCGCaCGGCg -3'
miRNA:   3'- -GGUGUGU-----CGGCCaGG-GGUGCG-GCUGg -5'
5480 5' -60.4 NC_001798.1 + 1665 0.67 0.716003
Target:  5'- gCGCGCGuGCgCGGcCUCCACGCgcgcgaaGACCc -3'
miRNA:   3'- gGUGUGU-CG-GCCaGGGGUGCGg------CUGG- -5'
5480 5' -60.4 NC_001798.1 + 1727 0.75 0.303499
Target:  5'- gCACgguGCGGCgcaGGUCCCgCGcCGCCGGCCa -3'
miRNA:   3'- gGUG---UGUCGg--CCAGGG-GU-GCGGCUGG- -5'
5480 5' -60.4 NC_001798.1 + 1884 0.66 0.753341
Target:  5'- gUCGCAgGcGCCGGccagcagCCCCaggaacuccacgGCGCCGGCg -3'
miRNA:   3'- -GGUGUgU-CGGCCa------GGGG------------UGCGGCUGg -5'
5480 5' -60.4 NC_001798.1 + 2030 0.75 0.310241
Target:  5'- cCCGCAgAGCCGGUUgCCCAgGgCCG-CCa -3'
miRNA:   3'- -GGUGUgUCGGCCAG-GGGUgC-GGCuGG- -5'
5480 5' -60.4 NC_001798.1 + 2120 0.75 0.310241
Target:  5'- gCC-CGCGGCCaGGUCCUCGC-CCGGCa -3'
miRNA:   3'- -GGuGUGUCGG-CCAGGGGUGcGGCUGg -5'
5480 5' -60.4 NC_001798.1 + 2208 0.66 0.780352
Target:  5'- gCCGCGCGGCgcagCGGgCCCgaggCGCGCagcgGGCCg -3'
miRNA:   3'- -GGUGUGUCG----GCCaGGG----GUGCGg---CUGG- -5'
5480 5' -60.4 NC_001798.1 + 2849 0.66 0.753341
Target:  5'- gCGCACGGCggccacggCGG-CCUCGCuGCCG-CCg -3'
miRNA:   3'- gGUGUGUCG--------GCCaGGGGUG-CGGCuGG- -5'
5480 5' -60.4 NC_001798.1 + 2883 0.76 0.25946
Target:  5'- gCCACGC-GCaGGUCCCCGCGCaGGCg -3'
miRNA:   3'- -GGUGUGuCGgCCAGGGGUGCGgCUGg -5'
5480 5' -60.4 NC_001798.1 + 3125 0.82 0.098705
Target:  5'- gCCACGCGGCCcgccUCCgCGCGCCGGCCg -3'
miRNA:   3'- -GGUGUGUCGGcc--AGGgGUGCGGCUGG- -5'
5480 5' -60.4 NC_001798.1 + 3278 0.69 0.608452
Target:  5'- aCCGCGCgcucgucGGCCGGcgaCgCCGcCGCCGACg -3'
miRNA:   3'- -GGUGUG-------UCGGCCa--GgGGU-GCGGCUGg -5'
5480 5' -60.4 NC_001798.1 + 3575 0.66 0.771459
Target:  5'- -gGCACGGCCcG-CgCCACGCUG-CCg -3'
miRNA:   3'- ggUGUGUCGGcCaGgGGUGCGGCuGG- -5'
5480 5' -60.4 NC_001798.1 + 3777 0.68 0.648453
Target:  5'- cCCACACGggcGCCGGggcgCCCgAgGCCucgaACCg -3'
miRNA:   3'- -GGUGUGU---CGGCCa---GGGgUgCGGc---UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.