miRNA display CGI


Results 1 - 20 of 340 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5480 5' -60.4 NC_001798.1 + 146492 0.85 0.065713
Target:  5'- gCCGgGCcgGGCCGGcaacgCCCCGCGCCGGCCg -3'
miRNA:   3'- -GGUgUG--UCGGCCa----GGGGUGCGGCUGG- -5'
5480 5' -60.4 NC_001798.1 + 21721 0.84 0.076414
Target:  5'- gCCGCGCAGCCGGUgugCCCCugGUgcggcggCGACCg -3'
miRNA:   3'- -GGUGUGUCGGCCA---GGGGugCG-------GCUGG- -5'
5480 5' -60.4 NC_001798.1 + 3125 0.82 0.098705
Target:  5'- gCCACGCGGCCcgccUCCgCGCGCCGGCCg -3'
miRNA:   3'- -GGUGUGUCGGcc--AGGgGUGCGGCUGG- -5'
5480 5' -60.4 NC_001798.1 + 58925 0.82 0.103796
Target:  5'- uCCACagggccACGGCCGcUCCCC-CGCCGACCa -3'
miRNA:   3'- -GGUG------UGUCGGCcAGGGGuGCGGCUGG- -5'
5480 5' -60.4 NC_001798.1 + 31662 0.81 0.120586
Target:  5'- -gACGCGGCCGGg-CCCGCGCCGcCCg -3'
miRNA:   3'- ggUGUGUCGGCCagGGGUGCGGCuGG- -5'
5480 5' -60.4 NC_001798.1 + 84887 0.81 0.12362
Target:  5'- aCCAgACGGCCGcGUcCCCCGCGCCGuCUc -3'
miRNA:   3'- -GGUgUGUCGGC-CA-GGGGUGCGGCuGG- -5'
5480 5' -60.4 NC_001798.1 + 27928 0.81 0.126724
Target:  5'- cCC-CGCcGCCGGggUCCCgGCGCCGGCCg -3'
miRNA:   3'- -GGuGUGuCGGCC--AGGGgUGCGGCUGG- -5'
5480 5' -60.4 NC_001798.1 + 144636 0.8 0.139874
Target:  5'- aCgACACAGgCGGUUCCCACGuuGACg -3'
miRNA:   3'- -GgUGUGUCgGCCAGGGGUGCggCUGg -5'
5480 5' -60.4 NC_001798.1 + 31604 0.79 0.161952
Target:  5'- cCCGCGCGuCCGGaguccgCCCCGCGCCGccGCCg -3'
miRNA:   3'- -GGUGUGUcGGCCa-----GGGGUGCGGC--UGG- -5'
5480 5' -60.4 NC_001798.1 + 134373 0.78 0.178369
Target:  5'- cCCGC-CGGCCGcUCCUCGCGCCGcCCu -3'
miRNA:   3'- -GGUGuGUCGGCcAGGGGUGCGGCuGG- -5'
5480 5' -60.4 NC_001798.1 + 146639 0.78 0.182698
Target:  5'- cCCGCgggcauccgGCGGCCGG-CCCCACGCCcuuCCa -3'
miRNA:   3'- -GGUG---------UGUCGGCCaGGGGUGCGGcu-GG- -5'
5480 5' -60.4 NC_001798.1 + 29018 0.78 0.190272
Target:  5'- gCCGCGCGGgcccggacuccgccCCGGcgaccgCCCCGCGCCGGCUu -3'
miRNA:   3'- -GGUGUGUC--------------GGCCa-----GGGGUGCGGCUGG- -5'
5480 5' -60.4 NC_001798.1 + 32792 0.78 0.196247
Target:  5'- cCCGCGcCGGCCGGcgacgCCCC-CGCgGGCCa -3'
miRNA:   3'- -GGUGU-GUCGGCCa----GGGGuGCGgCUGG- -5'
5480 5' -60.4 NC_001798.1 + 54604 0.77 0.220778
Target:  5'- gCAUAUGGCCGGggcgcCCCCGCGCCucCCg -3'
miRNA:   3'- gGUGUGUCGGCCa----GGGGUGCGGcuGG- -5'
5480 5' -60.4 NC_001798.1 + 82030 0.77 0.2313
Target:  5'- gCCGCcagacaACAGCgGGUCCCU-CGCCGACa -3'
miRNA:   3'- -GGUG------UGUCGgCCAGGGGuGCGGCUGg -5'
5480 5' -60.4 NC_001798.1 + 23704 0.76 0.244482
Target:  5'- gCCGCuucACGGCCGGgcggCCCCggcgggucgagcuggACGCCGACg -3'
miRNA:   3'- -GGUG---UGUCGGCCa---GGGG---------------UGCGGCUGg -5'
5480 5' -60.4 NC_001798.1 + 116424 0.76 0.247874
Target:  5'- cCCGCGCGGCCGacgCCgCCgACGaCCGGCCg -3'
miRNA:   3'- -GGUGUGUCGGCca-GG-GG-UGC-GGCUGG- -5'
5480 5' -60.4 NC_001798.1 + 140678 0.76 0.247874
Target:  5'- cUCACGCAGCaa---CCCACGCUGACCa -3'
miRNA:   3'- -GGUGUGUCGgccagGGGUGCGGCUGG- -5'
5480 5' -60.4 NC_001798.1 + 54546 0.76 0.248443
Target:  5'- uCgACGCGGCCGaccggggucccgagCCCUGCGCCGGCCg -3'
miRNA:   3'- -GgUGUGUCGGCca------------GGGGUGCGGCUGG- -5'
5480 5' -60.4 NC_001798.1 + 2883 0.76 0.25946
Target:  5'- gCCACGC-GCaGGUCCCCGCGCaGGCg -3'
miRNA:   3'- -GGUGUGuCGgCCAGGGGUGCGgCUGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.