miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5481 3' -55.4 NC_001798.1 + 146353 0.66 0.926131
Target:  5'- aGGGggGGggGGGgAGAGGGaaagcaacGGGAa -3'
miRNA:   3'- -UCCuaCCuuCCCgUCUUCUac------CCCUc -5'
5481 3' -55.4 NC_001798.1 + 121720 0.66 0.924497
Target:  5'- -cGAcGGAGGcGGCGGcccaccugucccugGGGAUGGGGAa -3'
miRNA:   3'- ucCUaCCUUC-CCGUC--------------UUCUACCCCUc -5'
5481 3' -55.4 NC_001798.1 + 23 0.66 0.920598
Target:  5'- gGGGAgucaacccccGGggGGGguGuuuuuUGGGGGGg -3'
miRNA:   3'- -UCCUa---------CCuuCCCguCuucu-ACCCCUC- -5'
5481 3' -55.4 NC_001798.1 + 40444 0.66 0.920598
Target:  5'- gGGGGUgcGGAAGcacGCGGuAGGGUGGGGuGu -3'
miRNA:   3'- -UCCUA--CCUUCc--CGUC-UUCUACCCCuC- -5'
5481 3' -55.4 NC_001798.1 + 125661 0.66 0.920598
Target:  5'- gAGGcgGGGGcGGCuGAGGucaGGGGGGu -3'
miRNA:   3'- -UCCuaCCUUcCCGuCUUCua-CCCCUC- -5'
5481 3' -55.4 NC_001798.1 + 154361 0.66 0.920598
Target:  5'- gGGGAgucaacccccGGggGGGguGuuuuuUGGGGGGg -3'
miRNA:   3'- -UCCUa---------CCuuCCCguCuucu-ACCCCUC- -5'
5481 3' -55.4 NC_001798.1 + 84381 0.66 0.914821
Target:  5'- uGGAacUGGAaggcacaucucgAGGGCGGGuuGGAUGGcGAGu -3'
miRNA:   3'- uCCU--ACCU------------UCCCGUCU--UCUACCcCUC- -5'
5481 3' -55.4 NC_001798.1 + 48679 0.66 0.914821
Target:  5'- cGGG-GGAcGGGCcgcccGGAGcGGUGGGGAa -3'
miRNA:   3'- uCCUaCCUuCCCG-----UCUU-CUACCCCUc -5'
5481 3' -55.4 NC_001798.1 + 152176 0.66 0.914821
Target:  5'- gGGGAaaaGGggGGGCcuGAGAcccGGGGGu -3'
miRNA:   3'- -UCCUa--CCuuCCCGucUUCUa--CCCCUc -5'
5481 3' -55.4 NC_001798.1 + 68139 0.66 0.908802
Target:  5'- gAGGgcGGAguugguguguAGGGgGGggGAaGuGGGAGg -3'
miRNA:   3'- -UCCuaCCU----------UCCCgUCuuCUaC-CCCUC- -5'
5481 3' -55.4 NC_001798.1 + 34079 0.66 0.902542
Target:  5'- uGGGGUuguugGGggGGGguGAccGGcgcGUGGGGGc -3'
miRNA:   3'- -UCCUA-----CCuuCCCguCU--UC---UACCCCUc -5'
5481 3' -55.4 NC_001798.1 + 96033 0.66 0.902542
Target:  5'- cGGGgcGGgcGGGCGGGcgacgggcauaaAGA-GGGGAu -3'
miRNA:   3'- -UCCuaCCuuCCCGUCU------------UCUaCCCCUc -5'
5481 3' -55.4 NC_001798.1 + 137465 0.66 0.902542
Target:  5'- ----cGGAAaucGGCGGggGuUGGGGAGg -3'
miRNA:   3'- uccuaCCUUc--CCGUCuuCuACCCCUC- -5'
5481 3' -55.4 NC_001798.1 + 150569 0.66 0.896043
Target:  5'- cGGGGcccgcgGGgcGGcGCGGAgacGGcgGGGGAGa -3'
miRNA:   3'- -UCCUa-----CCuuCC-CGUCU---UCuaCCCCUC- -5'
5481 3' -55.4 NC_001798.1 + 14310 0.66 0.896043
Target:  5'- cGGAUGaGuGGGGGguGc--GUGGGGAGg -3'
miRNA:   3'- uCCUAC-C-UUCCCguCuucUACCCCUC- -5'
5481 3' -55.4 NC_001798.1 + 61152 0.67 0.88931
Target:  5'- gAGGGcucggGGGAGGG-GGAGGG-GGGGAa -3'
miRNA:   3'- -UCCUa----CCUUCCCgUCUUCUaCCCCUc -5'
5481 3' -55.4 NC_001798.1 + 29908 0.67 0.88931
Target:  5'- gGGGGUGGucgcGGGCGGuGGGcucGGGGGc -3'
miRNA:   3'- -UCCUACCuu--CCCGUCuUCUa--CCCCUc -5'
5481 3' -55.4 NC_001798.1 + 6611 0.67 0.882346
Target:  5'- cGGggGGAcGGGgGGAcgGGccGGGGGGa -3'
miRNA:   3'- uCCuaCCUuCCCgUCU--UCuaCCCCUC- -5'
5481 3' -55.4 NC_001798.1 + 146095 0.67 0.882346
Target:  5'- gAGGcgGGc-GGGCGaAGGAaGGGGGGg -3'
miRNA:   3'- -UCCuaCCuuCCCGUcUUCUaCCCCUC- -5'
5481 3' -55.4 NC_001798.1 + 11666 0.67 0.882346
Target:  5'- gGGGGUcGGGucucGGGgGGAGGAcGGGGGu -3'
miRNA:   3'- -UCCUA-CCUu---CCCgUCUUCUaCCCCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.