Results 1 - 20 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5481 | 3' | -55.4 | NC_001798.1 | + | 23 | 0.66 | 0.920598 |
Target: 5'- gGGGAgucaacccccGGggGGGguGuuuuuUGGGGGGg -3' miRNA: 3'- -UCCUa---------CCuuCCCguCuucu-ACCCCUC- -5' |
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5481 | 3' | -55.4 | NC_001798.1 | + | 2558 | 0.69 | 0.773465 |
Target: 5'- -cGcgGGAGGGGCGGccgcGGGgcGGGGGGc -3' miRNA: 3'- ucCuaCCUUCCCGUC----UUCuaCCCCUC- -5' |
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5481 | 3' | -55.4 | NC_001798.1 | + | 4282 | 0.75 | 0.425957 |
Target: 5'- gAGGA-GGAGGaGGCGGAGGAggaGGcGGAGg -3' miRNA: 3'- -UCCUaCCUUC-CCGUCUUCUa--CC-CCUC- -5' |
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5481 | 3' | -55.4 | NC_001798.1 | + | 6239 | 0.81 | 0.207195 |
Target: 5'- cGGggGGAcGGGCGGggGAcGGGGGGa -3' miRNA: 3'- uCCuaCCUuCCCGUCuuCUaCCCCUC- -5' |
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5481 | 3' | -55.4 | NC_001798.1 | + | 6271 | 0.68 | 0.852272 |
Target: 5'- cGGggGGAcGGGCcgGGggGAcgggccGGGGGGa -3' miRNA: 3'- uCCuaCCUuCCCG--UCuuCUa-----CCCCUC- -5' |
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5481 | 3' | -55.4 | NC_001798.1 | + | 6310 | 0.68 | 0.852272 |
Target: 5'- cGGggGGAcGGGCcgGGggGAcgggccGGGGGGa -3' miRNA: 3'- uCCuaCCUuCCCG--UCuuCUa-----CCCCUC- -5' |
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5481 | 3' | -55.4 | NC_001798.1 | + | 6362 | 0.7 | 0.734706 |
Target: 5'- cGGggGGAcGGGCcgGGggGccGGGGGGc -3' miRNA: 3'- uCCuaCCUuCCCG--UCuuCuaCCCCUC- -5' |
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5481 | 3' | -55.4 | NC_001798.1 | + | 6393 | 0.72 | 0.63275 |
Target: 5'- gGGGGccGggGGGCcgGGggGAcGGGGGGa -3' miRNA: 3'- -UCCUacCuuCCCG--UCuuCUaCCCCUC- -5' |
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5481 | 3' | -55.4 | NC_001798.1 | + | 6426 | 0.7 | 0.724765 |
Target: 5'- gGGGAcGGggGGaCGGggGGacGGGGGGa -3' miRNA: 3'- -UCCUaCCuuCCcGUCuuCUa-CCCCUC- -5' |
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5481 | 3' | -55.4 | NC_001798.1 | + | 6458 | 0.7 | 0.724765 |
Target: 5'- gGGGAcGGggGGaCGGggGGacGGGGGGa -3' miRNA: 3'- -UCCUaCCuuCCcGUCuuCUa-CCCCUC- -5' |
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5481 | 3' | -55.4 | NC_001798.1 | + | 6490 | 0.7 | 0.724765 |
Target: 5'- gGGGAcGGggGGaCGGggGGacGGGGGGa -3' miRNA: 3'- -UCCUaCCuuCCcGUCuuCUa-CCCCUC- -5' |
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5481 | 3' | -55.4 | NC_001798.1 | + | 6535 | 0.74 | 0.530558 |
Target: 5'- cGGggGGAcGGGCcgGGggGAcGGGGGGa -3' miRNA: 3'- uCCuaCCUuCCCG--UCuuCUaCCCCUC- -5' |
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5481 | 3' | -55.4 | NC_001798.1 | + | 6577 | 0.74 | 0.530558 |
Target: 5'- cGGggGGAcGGGCcgGGggGAcGGGGGGa -3' miRNA: 3'- uCCuaCCUuCCCG--UCuuCUaCCCCUC- -5' |
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5481 | 3' | -55.4 | NC_001798.1 | + | 6611 | 0.67 | 0.882346 |
Target: 5'- cGGggGGAcGGGgGGAcgGGccGGGGGGa -3' miRNA: 3'- uCCuaCCUuCCCgUCU--UCuaCCCCUC- -5' |
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5481 | 3' | -55.4 | NC_001798.1 | + | 8884 | 0.71 | 0.674028 |
Target: 5'- aAGGGcgcUGGcgGAGGGCGGAggcgaAGGUGGGGu- -3' miRNA: 3'- -UCCU---ACC--UUCCCGUCU-----UCUACCCCuc -5' |
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5481 | 3' | -55.4 | NC_001798.1 | + | 9660 | 0.69 | 0.792108 |
Target: 5'- cGGGccgcgcGcGGAGGGCGcGGGAUGGGGGGc -3' miRNA: 3'- -UCCua----C-CUUCCCGUcUUCUACCCCUC- -5' |
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5481 | 3' | -55.4 | NC_001798.1 | + | 10300 | 0.73 | 0.540572 |
Target: 5'- cGGggGGAcgacGGGGgGGggGuUGGGGGGg -3' miRNA: 3'- uCCuaCCU----UCCCgUCuuCuACCCCUC- -5' |
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5481 | 3' | -55.4 | NC_001798.1 | + | 11150 | 0.74 | 0.491239 |
Target: 5'- gGGGggGGggGGGgGGAAauaaccacGAUGGGGGc -3' miRNA: 3'- -UCCuaCCuuCCCgUCUU--------CUACCCCUc -5' |
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5481 | 3' | -55.4 | NC_001798.1 | + | 11352 | 0.69 | 0.782856 |
Target: 5'- cGGGGuuUGGggGGGguGuuuGGGUGGGa-- -3' miRNA: 3'- -UCCU--ACCuuCCCguCu--UCUACCCcuc -5' |
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5481 | 3' | -55.4 | NC_001798.1 | + | 11666 | 0.67 | 0.882346 |
Target: 5'- gGGGGUcGGGucucGGGgGGAGGAcGGGGGu -3' miRNA: 3'- -UCCUA-CCUu---CCCgUCUUCUaCCCCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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