miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5481 3' -55.4 NC_001798.1 + 154361 0.66 0.920598
Target:  5'- gGGGAgucaacccccGGggGGGguGuuuuuUGGGGGGg -3'
miRNA:   3'- -UCCUa---------CCuuCCCguCuucu-ACCCCUC- -5'
5481 3' -55.4 NC_001798.1 + 153619 0.79 0.291185
Target:  5'- gGGGGUcGGAGGGGCgucAGggGGUcggaGGGGAGg -3'
miRNA:   3'- -UCCUA-CCUUCCCG---UCuuCUA----CCCCUC- -5'
5481 3' -55.4 NC_001798.1 + 153562 0.72 0.622409
Target:  5'- gGGGGUcGGAGGGGCgucAGggGGUcGGaGGGGc -3'
miRNA:   3'- -UCCUA-CCUUCCCG---UCuuCUA-CC-CCUC- -5'
5481 3' -55.4 NC_001798.1 + 153524 0.72 0.622409
Target:  5'- gGGGGUcGGAGGGGCgucAGggGGUcGGaGGGGc -3'
miRNA:   3'- -UCCUA-CCUUCCCG---UCuuCUA-CC-CCUC- -5'
5481 3' -55.4 NC_001798.1 + 152176 0.66 0.914821
Target:  5'- gGGGAaaaGGggGGGCcuGAGAcccGGGGGu -3'
miRNA:   3'- -UCCUa--CCuuCCCGucUUCUa--CCCCUc -5'
5481 3' -55.4 NC_001798.1 + 150569 0.66 0.896043
Target:  5'- cGGGGcccgcgGGgcGGcGCGGAgacGGcgGGGGAGa -3'
miRNA:   3'- -UCCUa-----CCuuCC-CGUCU---UCuaCCCCUC- -5'
5481 3' -55.4 NC_001798.1 + 149899 0.76 0.408268
Target:  5'- gAGGA-GGAGGaGGCGGAGGA-GGaGGAGg -3'
miRNA:   3'- -UCCUaCCUUC-CCGUCUUCUaCC-CCUC- -5'
5481 3' -55.4 NC_001798.1 + 149869 0.76 0.408268
Target:  5'- gAGGA-GGAGGaGGCGGAGGA-GGaGGAGg -3'
miRNA:   3'- -UCCUaCCUUC-CCGUCUUCUaCC-CCUC- -5'
5481 3' -55.4 NC_001798.1 + 149839 0.76 0.408268
Target:  5'- gAGGA-GGAGGaGGCGGAGGA-GGaGGAGg -3'
miRNA:   3'- -UCCUaCCUUC-CCGUCUUCUaCC-CCUC- -5'
5481 3' -55.4 NC_001798.1 + 148414 0.72 0.643091
Target:  5'- cGGGGUGGGcgccGGGGCGGggG-UGGGcacGGGc -3'
miRNA:   3'- -UCCUACCU----UCCCGUCuuCuACCC---CUC- -5'
5481 3' -55.4 NC_001798.1 + 148374 0.68 0.835988
Target:  5'- cAGGGUgaGGAGGGGCGGgcG-UGGcGGGc -3'
miRNA:   3'- -UCCUA--CCUUCCCGUCuuCuACC-CCUc -5'
5481 3' -55.4 NC_001798.1 + 148267 0.68 0.835988
Target:  5'- cAGGGUaaGGAGGGGCGGgcG-UGGcGGGc -3'
miRNA:   3'- -UCCUA--CCUUCCCGUCuuCuACC-CCUc -5'
5481 3' -55.4 NC_001798.1 + 147621 0.75 0.470194
Target:  5'- gAGGggGGggGGGCgggcggaagagAGAAGAgagcagggguugGGGGAGa -3'
miRNA:   3'- -UCCuaCCuuCCCG-----------UCUUCUa-----------CCCCUC- -5'
5481 3' -55.4 NC_001798.1 + 146353 0.66 0.926131
Target:  5'- aGGGggGGggGGGgAGAGGGaaagcaacGGGAa -3'
miRNA:   3'- -UCCuaCCuuCCCgUCUUCUac------CCCUc -5'
5481 3' -55.4 NC_001798.1 + 146305 0.73 0.560782
Target:  5'- uGGgcGGccGGGCgGGAGGAUGGcGGAGa -3'
miRNA:   3'- uCCuaCCuuCCCG-UCUUCUACC-CCUC- -5'
5481 3' -55.4 NC_001798.1 + 146154 1.08 0.003322
Target:  5'- gAGGAUGGAAGGGCAGAAGAUGGGGAGu -3'
miRNA:   3'- -UCCUACCUUCCCGUCUUCUACCCCUC- -5'
5481 3' -55.4 NC_001798.1 + 146095 0.67 0.882346
Target:  5'- gAGGcgGGc-GGGCGaAGGAaGGGGGGg -3'
miRNA:   3'- -UCCuaCCuuCCCGUcUUCUaCCCCUC- -5'
5481 3' -55.4 NC_001798.1 + 146038 0.69 0.763945
Target:  5'- -cGGUGGggGGcgugguGguGAAcGAUGGGGGGa -3'
miRNA:   3'- ucCUACCuuCC------CguCUU-CUACCCCUC- -5'
5481 3' -55.4 NC_001798.1 + 145837 0.68 0.835988
Target:  5'- cGGGGUGGGAGuGGU----GGUGGGGGa -3'
miRNA:   3'- -UCCUACCUUC-CCGucuuCUACCCCUc -5'
5481 3' -55.4 NC_001798.1 + 142827 0.7 0.714743
Target:  5'- cGGG-GGAAGGGUAGggGGaaaagaaaGGGGAc -3'
miRNA:   3'- uCCUaCCUUCCCGUCuuCUa-------CCCCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.