miRNA display CGI


Results 41 - 60 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5487 3' -64.5 NC_001798.1 + 24750 0.67 0.476944
Target:  5'- ---cCGACGCgcccCGCCuGCGCgCCUGGCUg -3'
miRNA:   3'- gcuaGCUGCG----GCGG-CGCG-GGGCCGAg -5'
5487 3' -64.5 NC_001798.1 + 24846 0.66 0.540647
Target:  5'- gCGGcagCGAgGCCGCCGUGgCCgCCGuGCg- -3'
miRNA:   3'- -GCUa--GCUgCGGCGGCGC-GG-GGC-CGag -5'
5487 3' -64.5 NC_001798.1 + 24908 0.66 0.578325
Target:  5'- ---cCGGCGCUGCCGCGgagCCCGcGCc- -3'
miRNA:   3'- gcuaGCUGCGGCGGCGCg--GGGC-CGag -5'
5487 3' -64.5 NC_001798.1 + 24936 0.7 0.354044
Target:  5'- uGAgCucCGCCGCCGCGCCgCCGcggaccuGCUCu -3'
miRNA:   3'- gCUaGcuGCGGCGGCGCGG-GGC-------CGAG- -5'
5487 3' -64.5 NC_001798.1 + 25056 0.66 0.578325
Target:  5'- gGcgCGcaaGCGCaagaGCCcCGCCCCGGC-Ca -3'
miRNA:   3'- gCuaGC---UGCGg---CGGcGCGGGGCCGaG- -5'
5487 3' -64.5 NC_001798.1 + 25088 0.7 0.347459
Target:  5'- ----gGGCGCCGCCgggcgGCGCCCCGcGCc- -3'
miRNA:   3'- gcuagCUGCGGCGG-----CGCGGGGC-CGag -5'
5487 3' -64.5 NC_001798.1 + 25189 0.71 0.274121
Target:  5'- ---cCGACGCCGCCgccgcggccgccGCGCCCCgcGGCg- -3'
miRNA:   3'- gcuaGCUGCGGCGG------------CGCGGGG--CCGag -5'
5487 3' -64.5 NC_001798.1 + 25308 0.68 0.405784
Target:  5'- --cUCGGcCGCCGCCcuggaggccuacuGCGCCCCGcgggccguggccgaGCUCa -3'
miRNA:   3'- gcuAGCU-GCGGCGG-------------CGCGGGGC--------------CGAG- -5'
5487 3' -64.5 NC_001798.1 + 25433 0.7 0.319259
Target:  5'- cCGcgCGcuGCGCCGCCccGCcCCCCGGCg- -3'
miRNA:   3'- -GCuaGC--UGCGGCGG--CGcGGGGCCGag -5'
5487 3' -64.5 NC_001798.1 + 25724 0.68 0.417181
Target:  5'- gGAcCGGCGCCcCCGaCGUCUCGGCg- -3'
miRNA:   3'- gCUaGCUGCGGcGGC-GCGGGGCCGag -5'
5487 3' -64.5 NC_001798.1 + 26068 0.7 0.354782
Target:  5'- cCGAcgCGcCGCCGCUGCGCCUCuGC-Cg -3'
miRNA:   3'- -GCUa-GCuGCGGCGGCGCGGGGcCGaG- -5'
5487 3' -64.5 NC_001798.1 + 26160 0.7 0.347459
Target:  5'- cCGcgCGAguacCGCCgcGCCGUGCuCCCGGCg- -3'
miRNA:   3'- -GCuaGCU----GCGG--CGGCGCG-GGGCCGag -5'
5487 3' -64.5 NC_001798.1 + 26220 0.66 0.522113
Target:  5'- gCGggCGACGCCaUgGCG-CCCGGCg- -3'
miRNA:   3'- -GCuaGCUGCGGcGgCGCgGGGCCGag -5'
5487 3' -64.5 NC_001798.1 + 26302 0.66 0.549998
Target:  5'- uGggCG-CGCCGCUGCGgCCCGuCUa -3'
miRNA:   3'- gCuaGCuGCGGCGGCGCgGGGCcGAg -5'
5487 3' -64.5 NC_001798.1 + 26338 0.71 0.299259
Target:  5'- gGcgCGACGCCgugcGCgGCGgCCCGGCg- -3'
miRNA:   3'- gCuaGCUGCGG----CGgCGCgGGGCCGag -5'
5487 3' -64.5 NC_001798.1 + 26410 0.68 0.433796
Target:  5'- uCGAgccCGACGgCGaCGCGCCCCcGCUg -3'
miRNA:   3'- -GCUa--GCUGCgGCgGCGCGGGGcCGAg -5'
5487 3' -64.5 NC_001798.1 + 27845 0.66 0.530424
Target:  5'- cCGAgUGAacucuccCGCCccgaCGCGCUCCGGCUCc -3'
miRNA:   3'- -GCUaGCU-------GCGGcg--GCGCGGGGCCGAG- -5'
5487 3' -64.5 NC_001798.1 + 27939 0.85 0.032554
Target:  5'- gGGUccCGGCGCCgGCCGCGCCCCGGCg- -3'
miRNA:   3'- gCUA--GCUGCGG-CGGCGCGGGGCCGag -5'
5487 3' -64.5 NC_001798.1 + 27985 0.77 0.112068
Target:  5'- ---cCGGCGCUccagccguGCCGCGCCCCGGCg- -3'
miRNA:   3'- gcuaGCUGCGG--------CGGCGCGGGGCCGag -5'
5487 3' -64.5 NC_001798.1 + 28065 0.75 0.173135
Target:  5'- gCGGUCGagagcGCGCCgGCCGCGUCCUcGCUCc -3'
miRNA:   3'- -GCUAGC-----UGCGG-CGGCGCGGGGcCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.