miRNA display CGI


Results 21 - 40 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5487 3' -64.5 NC_001798.1 + 9150 0.71 0.310471
Target:  5'- gCGGgcgCGGCGCCGcCCGCGCCggggggcagggucuCUGGCg- -3'
miRNA:   3'- -GCUa--GCUGCGGC-GGCGCGG--------------GGCCGag -5'
5487 3' -64.5 NC_001798.1 + 15562 0.66 0.559398
Target:  5'- ----gGGCGuuGCCGcCGCCgCGGCg- -3'
miRNA:   3'- gcuagCUGCggCGGC-GCGGgGCCGag -5'
5487 3' -64.5 NC_001798.1 + 17679 0.69 0.400159
Target:  5'- gGAUCGcggggugguucagGCGUCucagcaGCCGCGCCUCguGGCUCg -3'
miRNA:   3'- gCUAGC-------------UGCGG------CGGCGCGGGG--CCGAG- -5'
5487 3' -64.5 NC_001798.1 + 20350 0.68 0.42544
Target:  5'- gCGGUUGGCGCUGCCGgGCg--GGUUCg -3'
miRNA:   3'- -GCUAGCUGCGGCGGCgCGgggCCGAG- -5'
5487 3' -64.5 NC_001798.1 + 20779 0.7 0.354782
Target:  5'- gCGA-CGGCGcCCGCCGCGUaggucuCCCGcCUCa -3'
miRNA:   3'- -GCUaGCUGC-GGCGGCGCG------GGGCcGAG- -5'
5487 3' -64.5 NC_001798.1 + 21072 0.68 0.459421
Target:  5'- gGAUCGGgGCC-CCGuCcCCCCGGCcCg -3'
miRNA:   3'- gCUAGCUgCGGcGGC-GcGGGGCCGaG- -5'
5487 3' -64.5 NC_001798.1 + 21692 0.74 0.185836
Target:  5'- ---gCGAUGCCGCCGCugccGUCCCGGuCUCc -3'
miRNA:   3'- gcuaGCUGCGGCGGCG----CGGGGCC-GAG- -5'
5487 3' -64.5 NC_001798.1 + 22863 0.67 0.494792
Target:  5'- gGAcCGuCGCCccGCCGCgcgGCCCgGGUUCg -3'
miRNA:   3'- gCUaGCuGCGG--CGGCG---CGGGgCCGAG- -5'
5487 3' -64.5 NC_001798.1 + 22931 0.72 0.258706
Target:  5'- cCGA-CGACGCCGCCgccgauGCcgugccgacgaggcgGCCCCGGCg- -3'
miRNA:   3'- -GCUaGCUGCGGCGG------CG---------------CGGGGCCGag -5'
5487 3' -64.5 NC_001798.1 + 23004 0.67 0.512938
Target:  5'- gCGGaCGGCGUCGUCuCGCCgCGGCa- -3'
miRNA:   3'- -GCUaGCUGCGGCGGcGCGGgGCCGag -5'
5487 3' -64.5 NC_001798.1 + 23339 0.67 0.485829
Target:  5'- ---cCGcCGCCGgCGCGCCCCccgccggcGCUCg -3'
miRNA:   3'- gcuaGCuGCGGCgGCGCGGGGc-------CGAG- -5'
5487 3' -64.5 NC_001798.1 + 23479 0.78 0.099065
Target:  5'- aCGA-CGACGCCGcCCGCGCCCCcGC-Ca -3'
miRNA:   3'- -GCUaGCUGCGGC-GGCGCGGGGcCGaG- -5'
5487 3' -64.5 NC_001798.1 + 23640 0.68 0.441397
Target:  5'- gCGAcCGcgggccgccuggaGCGCCGCCGgGCCCgcgCGGCg- -3'
miRNA:   3'- -GCUaGC-------------UGCGGCGGCgCGGG---GCCGag -5'
5487 3' -64.5 NC_001798.1 + 23686 0.71 0.278395
Target:  5'- cCGGccgCGACGCCacggGCCGCuucacggccgggcgGCCCCGGCg- -3'
miRNA:   3'- -GCUa--GCUGCGG----CGGCG--------------CGGGGCCGag -5'
5487 3' -64.5 NC_001798.1 + 23734 0.68 0.433796
Target:  5'- uCGAgcUgGACGCCGaCGCgGCCuCCGGCg- -3'
miRNA:   3'- -GCU--AgCUGCGGCgGCG-CGG-GGCCGag -5'
5487 3' -64.5 NC_001798.1 + 23857 0.66 0.537852
Target:  5'- uGggCGACaGCCGCCccggccucugggggGCGCCCgaGGCg- -3'
miRNA:   3'- gCuaGCUG-CGGCGG--------------CGCGGGg-CCGag -5'
5487 3' -64.5 NC_001798.1 + 23912 0.68 0.42544
Target:  5'- cCGGuUCGAgGCCucggGCGCCCCGGCg- -3'
miRNA:   3'- -GCU-AGCUgCGGcgg-CGCGGGGCCGag -5'
5487 3' -64.5 NC_001798.1 + 24270 0.67 0.50383
Target:  5'- uGcgCcGCGCCuaCGCGCCCCuGCUg -3'
miRNA:   3'- gCuaGcUGCGGcgGCGCGGGGcCGAg -5'
5487 3' -64.5 NC_001798.1 + 24387 0.68 0.450788
Target:  5'- ---cCGcCGCCGCCGcCGCCCCGuuGCcgUCg -3'
miRNA:   3'- gcuaGCuGCGGCGGC-GCGGGGC--CG--AG- -5'
5487 3' -64.5 NC_001798.1 + 24689 0.72 0.250703
Target:  5'- gGAgccCGGC-CCGCCGCGCCCCcGCg- -3'
miRNA:   3'- gCUa--GCUGcGGCGGCGCGGGGcCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.