miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5487 3' -64.5 NC_001798.1 + 1182 0.67 0.46814
Target:  5'- --cUCcACGCCGCCGCccGCCgCGGC-Ca -3'
miRNA:   3'- gcuAGcUGCGGCGGCG--CGGgGCCGaG- -5'
5487 3' -64.5 NC_001798.1 + 1366 0.66 0.578325
Target:  5'- cCGccgCGcACGgCGUCGCGCCCCaGCg- -3'
miRNA:   3'- -GCua-GC-UGCgGCGGCGCGGGGcCGag -5'
5487 3' -64.5 NC_001798.1 + 1492 0.68 0.433796
Target:  5'- ---aUGGCGUCGcCCGCGCCCgaGGCg- -3'
miRNA:   3'- gcuaGCUGCGGC-GGCGCGGGg-CCGag -5'
5487 3' -64.5 NC_001798.1 + 1729 0.71 0.305816
Target:  5'- aCGGUgCGGCGCaggucCCGCGCCgCCGGC-Ca -3'
miRNA:   3'- -GCUA-GCUGCGgc---GGCGCGG-GGCCGaG- -5'
5487 3' -64.5 NC_001798.1 + 2413 0.7 0.354782
Target:  5'- cCGAg-GGCGCCggcgugugGCUGgGCCCCGGCg- -3'
miRNA:   3'- -GCUagCUGCGG--------CGGCgCGGGGCCGag -5'
5487 3' -64.5 NC_001798.1 + 2448 0.67 0.467265
Target:  5'- uGG-CGGCGCCaGCCGCccugcgggucgggGCCCuCGGCg- -3'
miRNA:   3'- gCUaGCUGCGG-CGGCG-------------CGGG-GCCGag -5'
5487 3' -64.5 NC_001798.1 + 2617 0.73 0.234242
Target:  5'- ----gGGCGCCGCCcggcgGCGCCCUGGC-Cg -3'
miRNA:   3'- gcuagCUGCGGCGG-----CGCGGGGCCGaG- -5'
5487 3' -64.5 NC_001798.1 + 3180 0.7 0.340245
Target:  5'- -cGUCGuCGUCGUCGUcgGCCCCGGC-Cg -3'
miRNA:   3'- gcUAGCuGCGGCGGCG--CGGGGCCGaG- -5'
5487 3' -64.5 NC_001798.1 + 3294 0.68 0.417181
Target:  5'- cCGG-CGACGCCGCCGC-CgaCGGCa- -3'
miRNA:   3'- -GCUaGCUGCGGCGGCGcGggGCCGag -5'
5487 3' -64.5 NC_001798.1 + 3367 0.73 0.227395
Target:  5'- gCGGUUGGCgucGCCGCCgucgucggggguucGCGCCCCGGUc- -3'
miRNA:   3'- -GCUAGCUG---CGGCGG--------------CGCGGGGCCGag -5'
5487 3' -64.5 NC_001798.1 + 3735 0.66 0.567895
Target:  5'- uGAUCagGGCGUacugcugCGCCGCGUcgCCCaGCUCg -3'
miRNA:   3'- gCUAG--CUGCG-------GCGGCGCG--GGGcCGAG- -5'
5487 3' -64.5 NC_001798.1 + 4032 0.7 0.326145
Target:  5'- gCGGcCGGCcaCCGCCGCGCgggCCCGGCg- -3'
miRNA:   3'- -GCUaGCUGc-GGCGGCGCG---GGGCCGag -5'
5487 3' -64.5 NC_001798.1 + 4616 0.69 0.385146
Target:  5'- --cUUGcGCGCCGUCGCGCUCCGGg-- -3'
miRNA:   3'- gcuAGC-UGCGGCGGCGCGGGGCCgag -5'
5487 3' -64.5 NC_001798.1 + 4706 0.72 0.268107
Target:  5'- aGA-CGACGCCGuCCGCGgCa-GGCUCg -3'
miRNA:   3'- gCUaGCUGCGGC-GGCGCgGggCCGAG- -5'
5487 3' -64.5 NC_001798.1 + 4915 0.71 0.286473
Target:  5'- cCGGUCGuCuCCGCCGCGgCCCGGa-- -3'
miRNA:   3'- -GCUAGCuGcGGCGGCGCgGGGCCgag -5'
5487 3' -64.5 NC_001798.1 + 5294 1.09 0.000595
Target:  5'- gCGAUCGACGCCGCCGCGCCCCGGCUCg -3'
miRNA:   3'- -GCUAGCUGCGGCGGCGCGGGGCCGAG- -5'
5487 3' -64.5 NC_001798.1 + 5406 0.71 0.274121
Target:  5'- uGGUCG-CGCCGCCGcCGCUCCGcccGCg- -3'
miRNA:   3'- gCUAGCuGCGGCGGC-GCGGGGC---CGag -5'
5487 3' -64.5 NC_001798.1 + 5528 0.66 0.54906
Target:  5'- cCGGguUCGugGUaaugagaUGCCG-GCCCCGcGCUCc -3'
miRNA:   3'- -GCU--AGCugCG-------GCGGCgCGGGGC-CGAG- -5'
5487 3' -64.5 NC_001798.1 + 7865 0.67 0.50383
Target:  5'- -aGUCcuCGCCGCUGUgGCCCUGGCg- -3'
miRNA:   3'- gcUAGcuGCGGCGGCG-CGGGGCCGag -5'
5487 3' -64.5 NC_001798.1 + 8950 0.7 0.340245
Target:  5'- gCGGg-GugGCCGCCggaccuuuauGCGCCUCGGCg- -3'
miRNA:   3'- -GCUagCugCGGCGG----------CGCGGGGCCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.