miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5487 3' -64.5 NC_001798.1 + 153691 0.66 0.549998
Target:  5'- gCGGggGcCGCCGCCgGCGCa--GGCUCa -3'
miRNA:   3'- -GCUagCuGCGGCGG-CGCGgggCCGAG- -5'
5487 3' -64.5 NC_001798.1 + 153404 0.67 0.512938
Target:  5'- gCGGUCGGC-CCGCuCGCGCgCCCaGGa-- -3'
miRNA:   3'- -GCUAGCUGcGGCG-GCGCG-GGG-CCgag -5'
5487 3' -64.5 NC_001798.1 + 153255 0.66 0.549998
Target:  5'- cCGcgCGcCGCCGCCGCcGCCUccuccuccuccgCGGgUCc -3'
miRNA:   3'- -GCuaGCuGCGGCGGCG-CGGG------------GCCgAG- -5'
5487 3' -64.5 NC_001798.1 + 153050 0.66 0.540647
Target:  5'- gCGGUUGGcCGgCGCCGCcCCCUGGggCg -3'
miRNA:   3'- -GCUAGCU-GCgGCGGCGcGGGGCCgaG- -5'
5487 3' -64.5 NC_001798.1 + 152492 0.69 0.385146
Target:  5'- aCGAUUcccccaauaGCCG-CGCGCCCCGGCg- -3'
miRNA:   3'- -GCUAGcug------CGGCgGCGCGGGGCCGag -5'
5487 3' -64.5 NC_001798.1 + 150811 0.67 0.494792
Target:  5'- ----gGGCGCCGCCGCuGCUgCuGCUCc -3'
miRNA:   3'- gcuagCUGCGGCGGCG-CGGgGcCGAG- -5'
5487 3' -64.5 NC_001798.1 + 149662 0.67 0.46814
Target:  5'- ----gGGCGCCggGUCGCggGCCCCgGGCUCg -3'
miRNA:   3'- gcuagCUGCGG--CGGCG--CGGGG-CCGAG- -5'
5487 3' -64.5 NC_001798.1 + 149258 0.7 0.347459
Target:  5'- cCGGcCGGCGCgGgCGCGCCCU-GCUCc -3'
miRNA:   3'- -GCUaGCUGCGgCgGCGCGGGGcCGAG- -5'
5487 3' -64.5 NC_001798.1 + 148790 0.7 0.319259
Target:  5'- gGAgccaGaACGagGCCGgGCCCCGGCUCu -3'
miRNA:   3'- gCUag--C-UGCggCGGCgCGGGGCCGAG- -5'
5487 3' -64.5 NC_001798.1 + 147029 0.68 0.42544
Target:  5'- cCGGggcUUGGcCGCCGaggUGCGCCCCGGC-Cg -3'
miRNA:   3'- -GCU---AGCU-GCGGCg--GCGCGGGGCCGaG- -5'
5487 3' -64.5 NC_001798.1 + 145895 0.77 0.126655
Target:  5'- ---cCGAcCGCCGCCGCGCCCCaccGGCg- -3'
miRNA:   3'- gcuaGCU-GCGGCGGCGCGGGG---CCGag -5'
5487 3' -64.5 NC_001798.1 + 143877 0.69 0.40096
Target:  5'- gGAguggGACGCCGCC--GCCCCGcGCUUg -3'
miRNA:   3'- gCUag--CUGCGGCGGcgCGGGGC-CGAG- -5'
5487 3' -64.5 NC_001798.1 + 143294 0.67 0.512938
Target:  5'- aCGua-GGgGCCGuCCGC-CCCCGGCg- -3'
miRNA:   3'- -GCuagCUgCGGC-GGCGcGGGGCCGag -5'
5487 3' -64.5 NC_001798.1 + 141120 0.67 0.476944
Target:  5'- ----gGACGCCGCCgGCGCaUCGGCa- -3'
miRNA:   3'- gcuagCUGCGGCGG-CGCGgGGCCGag -5'
5487 3' -64.5 NC_001798.1 + 139531 0.66 0.540647
Target:  5'- aGcUCGACGUCacgcagguGCCGCGCCUgcagUGGUUCc -3'
miRNA:   3'- gCuAGCUGCGG--------CGGCGCGGG----GCCGAG- -5'
5487 3' -64.5 NC_001798.1 + 138732 0.7 0.340245
Target:  5'- gGGcCGGCGCgCuCCGCgGCCCCGGCg- -3'
miRNA:   3'- gCUaGCUGCG-GcGGCG-CGGGGCCGag -5'
5487 3' -64.5 NC_001798.1 + 138402 0.68 0.433796
Target:  5'- cCGcgCGGCGCCaGCCa--CCCCGcGCUCg -3'
miRNA:   3'- -GCuaGCUGCGG-CGGcgcGGGGC-CGAG- -5'
5487 3' -64.5 NC_001798.1 + 135519 0.71 0.280243
Target:  5'- gCGAUCcagGACGcCCGCCGgGCCCUcgaGGCg- -3'
miRNA:   3'- -GCUAG---CUGC-GGCGGCgCGGGG---CCGag -5'
5487 3' -64.5 NC_001798.1 + 135343 0.73 0.208832
Target:  5'- aCGcgugCGACGCCugccCCGCGCUCCGGCa- -3'
miRNA:   3'- -GCua--GCUGCGGc---GGCGCGGGGCCGag -5'
5487 3' -64.5 NC_001798.1 + 134916 0.66 0.578325
Target:  5'- ---cCGGcCGCCGCCGcCGCCgagUCGGCg- -3'
miRNA:   3'- gcuaGCU-GCGGCGGC-GCGG---GGCCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.