miRNA display CGI


Results 21 - 40 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5487 3' -64.5 NC_001798.1 + 69313 0.66 0.559398
Target:  5'- aCGGUCa--GCCcucCCGCGCgCCgGGCUCc -3'
miRNA:   3'- -GCUAGcugCGGc--GGCGCG-GGgCCGAG- -5'
5487 3' -64.5 NC_001798.1 + 86816 0.66 0.559398
Target:  5'- ---aUGAcauCGCCcCCGuCGCUCCGGCUCc -3'
miRNA:   3'- gcuaGCU---GCGGcGGC-GCGGGGCCGAG- -5'
5487 3' -64.5 NC_001798.1 + 26302 0.66 0.549998
Target:  5'- uGggCG-CGCCGCUGCGgCCCGuCUa -3'
miRNA:   3'- gCuaGCuGCGGCGGCGCgGGGCcGAg -5'
5487 3' -64.5 NC_001798.1 + 86065 0.66 0.549998
Target:  5'- ---cCGGCacccCCGCCGUcugggagucgggGCCCCGGCUg -3'
miRNA:   3'- gcuaGCUGc---GGCGGCG------------CGGGGCCGAg -5'
5487 3' -64.5 NC_001798.1 + 153255 0.66 0.549998
Target:  5'- cCGcgCGcCGCCGCCGCcGCCUccuccuccuccgCGGgUCc -3'
miRNA:   3'- -GCuaGCuGCGGCGGCG-CGGG------------GCCgAG- -5'
5487 3' -64.5 NC_001798.1 + 153691 0.66 0.549998
Target:  5'- gCGGggGcCGCCGCCgGCGCa--GGCUCa -3'
miRNA:   3'- -GCUagCuGCGGCGG-CGCGgggCCGAG- -5'
5487 3' -64.5 NC_001798.1 + 35436 0.66 0.549998
Target:  5'- gCGGgaggCGugGgCCGCUgGCGCCgCGGCcCg -3'
miRNA:   3'- -GCUa---GCugC-GGCGG-CGCGGgGCCGaG- -5'
5487 3' -64.5 NC_001798.1 + 107429 0.66 0.549998
Target:  5'- aCGGggGuCGCCGCgGCGaCCCCGcGCc- -3'
miRNA:   3'- -GCUagCuGCGGCGgCGC-GGGGC-CGag -5'
5487 3' -64.5 NC_001798.1 + 5528 0.66 0.54906
Target:  5'- cCGGguUCGugGUaaugagaUGCCG-GCCCCGcGCUCc -3'
miRNA:   3'- -GCU--AGCugCG-------GCGGCgCGGGGC-CGAG- -5'
5487 3' -64.5 NC_001798.1 + 139531 0.66 0.540647
Target:  5'- aGcUCGACGUCacgcagguGCCGCGCCUgcagUGGUUCc -3'
miRNA:   3'- gCuAGCUGCGG--------CGGCGCGGG----GCCGAG- -5'
5487 3' -64.5 NC_001798.1 + 24846 0.66 0.540647
Target:  5'- gCGGcagCGAgGCCGCCGUGgCCgCCGuGCg- -3'
miRNA:   3'- -GCUa--GCUgCGGCGGCGC-GG-GGC-CGag -5'
5487 3' -64.5 NC_001798.1 + 86974 0.66 0.540647
Target:  5'- ---aCGAgCGCCGUCGCuaCCgCGGCUUc -3'
miRNA:   3'- gcuaGCU-GCGGCGGCGcgGG-GCCGAG- -5'
5487 3' -64.5 NC_001798.1 + 153050 0.66 0.540647
Target:  5'- gCGGUUGGcCGgCGCCGCcCCCUGGggCg -3'
miRNA:   3'- -GCUAGCU-GCgGCGGCGcGGGGCCgaG- -5'
5487 3' -64.5 NC_001798.1 + 31615 0.66 0.540647
Target:  5'- gGAgucCGccccGCGCCGCCGcCGCCCCcguGGUg- -3'
miRNA:   3'- gCUa--GC----UGCGGCGGC-GCGGGG---CCGag -5'
5487 3' -64.5 NC_001798.1 + 102897 0.66 0.539715
Target:  5'- gCGAUCccggccuGcCGCCGCCGCucgGCCacaaGGCUCc -3'
miRNA:   3'- -GCUAG-------CuGCGGCGGCG---CGGgg--CCGAG- -5'
5487 3' -64.5 NC_001798.1 + 23857 0.66 0.537852
Target:  5'- uGggCGACaGCCGCCccggccucugggggGCGCCCgaGGCg- -3'
miRNA:   3'- gCuaGCUG-CGGCGG--------------CGCGGGg-CCGag -5'
5487 3' -64.5 NC_001798.1 + 122511 0.66 0.531351
Target:  5'- nCGAggGaccccuGCGCCacCCGCGCCCCGuGCUg -3'
miRNA:   3'- -GCUagC------UGCGGc-GGCGCGGGGC-CGAg -5'
5487 3' -64.5 NC_001798.1 + 79973 0.66 0.531351
Target:  5'- gCGccgCGucCGCCGCCGgGCCCCcggGGgUCc -3'
miRNA:   3'- -GCua-GCu-GCGGCGGCgCGGGG---CCgAG- -5'
5487 3' -64.5 NC_001798.1 + 74788 0.66 0.531351
Target:  5'- gGGUCcaccgcACGCCGCCcCGCCCCcGCa- -3'
miRNA:   3'- gCUAGc-----UGCGGCGGcGCGGGGcCGag -5'
5487 3' -64.5 NC_001798.1 + 27845 0.66 0.530424
Target:  5'- cCGAgUGAacucuccCGCCccgaCGCGCUCCGGCUCc -3'
miRNA:   3'- -GCUaGCU-------GCGGcg--GCGCGGGGCCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.