miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5487 5' -55.8 NC_001798.1 + 82809 0.67 0.870709
Target:  5'- cUCGaCCCCCucccaccGGAACCGCAUUGc- -3'
miRNA:   3'- -GGC-GGGGGucca---CCUUGGCGUAAUac -5'
5487 5' -55.8 NC_001798.1 + 84216 0.67 0.863273
Target:  5'- gCGCCCCCcgGGGcgccgUGGGGCCGguUa--- -3'
miRNA:   3'- gGCGGGGG--UCC-----ACCUUGGCguAauac -5'
5487 5' -55.8 NC_001798.1 + 85246 0.69 0.805798
Target:  5'- cCCGCCCCCccgcGGccgcgcGGGGCCGCGc---- -3'
miRNA:   3'- -GGCGGGGGu---CCa-----CCUUGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 85397 0.66 0.916567
Target:  5'- aCCGCCCCUGucUGGucuGCCGCAc---- -3'
miRNA:   3'- -GGCGGGGGUccACCu--UGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 86442 0.68 0.85563
Target:  5'- gCGCagCCCGGGgacgGGGGCCGguUcGUGa -3'
miRNA:   3'- gGCGg-GGGUCCa---CCUUGGCguAaUAC- -5'
5487 5' -55.8 NC_001798.1 + 87874 0.69 0.778669
Target:  5'- gCCGCCCCCagcAGGUGcGAGaaguaauaguCCGUGUUGa- -3'
miRNA:   3'- -GGCGGGGG---UCCAC-CUU----------GGCGUAAUac -5'
5487 5' -55.8 NC_001798.1 + 89133 0.76 0.392051
Target:  5'- uCCGCCUCCAGGUGcgcgacggccucGGGCCGCAg---- -3'
miRNA:   3'- -GGCGGGGGUCCAC------------CUUGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 89464 0.73 0.589622
Target:  5'- aCCGCCCCUGGGUGu--CCgGCAggAUGa -3'
miRNA:   3'- -GGCGGGGGUCCACcuuGG-CGUaaUAC- -5'
5487 5' -55.8 NC_001798.1 + 91455 0.68 0.85563
Target:  5'- cCCGCCCaCCcaacagcucgGGGUGGGAUgGCGgugccgAUGu -3'
miRNA:   3'- -GGCGGG-GG----------UCCACCUUGgCGUaa----UAC- -5'
5487 5' -55.8 NC_001798.1 + 91786 0.66 0.902735
Target:  5'- aCGCCCCCugccgaugacgcgcGGGgcgugGGGACCGUg----- -3'
miRNA:   3'- gGCGGGGG--------------UCCa----CCUUGGCGuaauac -5'
5487 5' -55.8 NC_001798.1 + 96823 0.67 0.891723
Target:  5'- cCCGCCgCCuGGcGGA-CCGCAUcUGUa -3'
miRNA:   3'- -GGCGGgGGuCCaCCUuGGCGUA-AUAc -5'
5487 5' -55.8 NC_001798.1 + 97927 0.66 0.916567
Target:  5'- gCGCCaCCAGGUGGAcCCGg------ -3'
miRNA:   3'- gGCGGgGGUCCACCUuGGCguaauac -5'
5487 5' -55.8 NC_001798.1 + 98620 0.66 0.927581
Target:  5'- cCCGCgCCUCGGGcGGcguGGCCGCGa---- -3'
miRNA:   3'- -GGCG-GGGGUCCaCC---UUGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 98863 0.7 0.750369
Target:  5'- cCCGCCCCCGacgggcgccacGGUGGugcaguuugagcAGCCGCGc---- -3'
miRNA:   3'- -GGCGGGGGU-----------CCACC------------UUGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 102429 0.66 0.927581
Target:  5'- -gGCCUCCAGGggacUGGGGcCCGCGa---- -3'
miRNA:   3'- ggCGGGGGUCC----ACCUU-GGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 102532 0.66 0.927581
Target:  5'- aCCGUCCCCGcGGccGGcaGGCCGCAc---- -3'
miRNA:   3'- -GGCGGGGGU-CCa-CC--UUGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 103071 0.67 0.889711
Target:  5'- gUCGCCgggUCCAGGUGGcgaaacggagcgauGGCCGCGUc--- -3'
miRNA:   3'- -GGCGG---GGGUCCACC--------------UUGGCGUAauac -5'
5487 5' -55.8 NC_001798.1 + 104265 0.7 0.711233
Target:  5'- gCGCCUCCAGGUuGuugucGCCGCuuuUUAUGg -3'
miRNA:   3'- gGCGGGGGUCCAcCu----UGGCGu--AAUAC- -5'
5487 5' -55.8 NC_001798.1 + 106014 0.7 0.750369
Target:  5'- gUCGCUCUCuGGUGGGGCCGgAUg--- -3'
miRNA:   3'- -GGCGGGGGuCCACCUUGGCgUAauac -5'
5487 5' -55.8 NC_001798.1 + 108682 0.7 0.721139
Target:  5'- gCCGCCCCCGGGgccgcCCGCGg---- -3'
miRNA:   3'- -GGCGGGGGUCCaccuuGGCGUaauac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.