miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5487 5' -55.8 NC_001798.1 + 25153 0.67 0.877933
Target:  5'- gCCGCCCCUcccgcgGGGGCCGCGc---- -3'
miRNA:   3'- -GGCGGGGGucca--CCUUGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 27214 0.69 0.777744
Target:  5'- -aGCCCCCGGGgcgGGGcgcgggggaggcgGCCGCGg---- -3'
miRNA:   3'- ggCGGGGGUCCa--CCU-------------UGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 28547 0.68 0.847786
Target:  5'- cCCGCCCgCAGGUGuGcuucucGCCGCGc---- -3'
miRNA:   3'- -GGCGGGgGUCCAC-Cu-----UGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 29488 0.69 0.778669
Target:  5'- -gGUCCCCGGGgacGGGGCCGCc----- -3'
miRNA:   3'- ggCGGGGGUCCa--CCUUGGCGuaauac -5'
5487 5' -55.8 NC_001798.1 + 31477 0.67 0.877933
Target:  5'- gCCGCCCCgCGGGccccGGGCCGCu----- -3'
miRNA:   3'- -GGCGGGG-GUCCac--CUUGGCGuaauac -5'
5487 5' -55.8 NC_001798.1 + 31635 0.67 0.884939
Target:  5'- gCCGCCCCCGuGGUGu--CUGCGa---- -3'
miRNA:   3'- -GGCGGGGGU-CCACcuuGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 31679 0.7 0.740717
Target:  5'- gCCGCCCgCCGugccGGUGGAcgcgcACCGCGc---- -3'
miRNA:   3'- -GGCGGG-GGU----CCACCU-----UGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 31967 0.71 0.675079
Target:  5'- cUCGCCCCCcaggGGGUGGGggccaagagggcggcGCCGCGc---- -3'
miRNA:   3'- -GGCGGGGG----UCCACCU---------------UGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 32579 0.74 0.490878
Target:  5'- gCgGCCCCCGcGUGGAGCCGCc----- -3'
miRNA:   3'- -GgCGGGGGUcCACCUUGGCGuaauac -5'
5487 5' -55.8 NC_001798.1 + 40817 0.67 0.869975
Target:  5'- gCGCCCCCuGGgggccgcUGGuuCCGCGUUuuUGg -3'
miRNA:   3'- gGCGGGGGuCC-------ACCuuGGCGUAAu-AC- -5'
5487 5' -55.8 NC_001798.1 + 44975 0.75 0.472002
Target:  5'- uCCGCCCUCggAGGcGGAGCCGCGg---- -3'
miRNA:   3'- -GGCGGGGG--UCCaCCUUGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 48373 0.66 0.927581
Target:  5'- gCCGCCCCgCGGGgcgUGccGCCGCGa---- -3'
miRNA:   3'- -GGCGGGG-GUCC---ACcuUGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 51217 0.66 0.90461
Target:  5'- uCCGCgCCCCAGGUccguuacggccaGGAGCCa------- -3'
miRNA:   3'- -GGCG-GGGGUCCA------------CCUUGGcguaauac -5'
5487 5' -55.8 NC_001798.1 + 57240 0.72 0.599767
Target:  5'- -gGCCCCCGGGcGGGGCCGaCAc---- -3'
miRNA:   3'- ggCGGGGGUCCaCCUUGGC-GUaauac -5'
5487 5' -55.8 NC_001798.1 + 62437 0.67 0.884939
Target:  5'- uCCaGCCCCCGgacgucgccGGUGG-GCCGCGc---- -3'
miRNA:   3'- -GG-CGGGGGU---------CCACCuUGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 65681 0.66 0.927581
Target:  5'- aCGCCCC--GGUGGGGCgCGUgcucuguuuGUUGUGc -3'
miRNA:   3'- gGCGGGGguCCACCUUG-GCG---------UAAUAC- -5'
5487 5' -55.8 NC_001798.1 + 66323 0.69 0.769354
Target:  5'- -gGCCuCCCGGGUacGGAugCGCAg-GUGg -3'
miRNA:   3'- ggCGG-GGGUCCA--CCUugGCGUaaUAC- -5'
5487 5' -55.8 NC_001798.1 + 70424 0.66 0.910706
Target:  5'- aCC-UCCCCGGGcugcUGGugcACCGCAUggcgGUGg -3'
miRNA:   3'- -GGcGGGGGUCC----ACCu--UGGCGUAa---UAC- -5'
5487 5' -55.8 NC_001798.1 + 81784 0.7 0.721139
Target:  5'- uCCGCCCCCcccgagGGGUGGcguCCGCc----- -3'
miRNA:   3'- -GGCGGGGG------UCCACCuu-GGCGuaauac -5'
5487 5' -55.8 NC_001798.1 + 81999 0.69 0.7969
Target:  5'- gUCGUCCCCGGG-GGcGACCGCc----- -3'
miRNA:   3'- -GGCGGGGGUCCaCC-UUGGCGuaauac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.