miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5487 5' -55.8 NC_001798.1 + 227 0.68 0.854855
Target:  5'- cCCGCCCCCgcgcggcAGGacgGGGACUaGCAggcUGUGc -3'
miRNA:   3'- -GGCGGGGG-------UCCa--CCUUGG-CGUa--AUAC- -5'
5487 5' -55.8 NC_001798.1 + 2105 0.67 0.863273
Target:  5'- cCCGCCCCCGGcGcGGc-CCGCGg---- -3'
miRNA:   3'- -GGCGGGGGUC-CaCCuuGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 2550 0.67 0.891723
Target:  5'- gCgGCCCCCGcGGgagGGGcgGCCGCGg---- -3'
miRNA:   3'- -GgCGGGGGU-CCa--CCU--UGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 3551 0.68 0.823118
Target:  5'- gCCGCcauggcguaCCCCAGGUGGGGcacggcCCGCGc---- -3'
miRNA:   3'- -GGCG---------GGGGUCCACCUU------GGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 3886 0.68 0.847786
Target:  5'- gCGCCCCgGGGgcggGGGGCCGg------ -3'
miRNA:   3'- gGCGGGGgUCCa---CCUUGGCguaauac -5'
5487 5' -55.8 NC_001798.1 + 5329 1.09 0.003202
Target:  5'- uCCGCCCCCAGGUGGAACCGCAUUAUGc -3'
miRNA:   3'- -GGCGGGGGUCCACCUUGGCGUAAUAC- -5'
5487 5' -55.8 NC_001798.1 + 5625 0.78 0.336281
Target:  5'- uCCGCCCCaaaGGGggcGGGGCCGCAggGUa -3'
miRNA:   3'- -GGCGGGGg--UCCa--CCUUGGCGUaaUAc -5'
5487 5' -55.8 NC_001798.1 + 5763 0.78 0.336281
Target:  5'- uCCGCCCCaaaGGGggcGGGGCCGCAggGUa -3'
miRNA:   3'- -GGCGGGGg--UCCa--CCUUGGCGUaaUAc -5'
5487 5' -55.8 NC_001798.1 + 7788 0.68 0.839748
Target:  5'- aCCGCCCCCGcuGGcgGGAGCCa------- -3'
miRNA:   3'- -GGCGGGGGU--CCa-CCUUGGcguaauac -5'
5487 5' -55.8 NC_001798.1 + 9125 0.66 0.927581
Target:  5'- gCCGCCgCgAGGUGGucuGCgGCAc---- -3'
miRNA:   3'- -GGCGGgGgUCCACCu--UGgCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 9345 0.67 0.877933
Target:  5'- aCGCCCCUcgcuauggGGGUauacagacGGAGCCGUug-GUGa -3'
miRNA:   3'- gGCGGGGG--------UCCA--------CCUUGGCGuaaUAC- -5'
5487 5' -55.8 NC_001798.1 + 9643 0.68 0.81454
Target:  5'- aCCGCCCCgAGGcgcaGcGGGCCGCGc---- -3'
miRNA:   3'- -GGCGGGGgUCCa---C-CUUGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 10580 0.72 0.650701
Target:  5'- gUCGCCCgCGGGgaacggGGGACUGUAUgcUAUGg -3'
miRNA:   3'- -GGCGGGgGUCCa-----CCUUGGCGUA--AUAC- -5'
5487 5' -55.8 NC_001798.1 + 10684 0.67 0.884939
Target:  5'- gCGCCaCCCAcgacGGgcgcagGGGACCGCAg---- -3'
miRNA:   3'- gGCGG-GGGU----CCa-----CCUUGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 11433 0.66 0.902106
Target:  5'- aCGCCCCCGGGguuguaaaucuGGCCGCGg---- -3'
miRNA:   3'- gGCGGGGGUCCacc--------UUGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 13040 0.68 0.839748
Target:  5'- aCGCUgCCGGGgGGAugCGCAg---- -3'
miRNA:   3'- gGCGGgGGUCCaCCUugGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 21808 0.74 0.490878
Target:  5'- cCCGCCUCgGGGcGGAGCCcGCGggAUGa -3'
miRNA:   3'- -GGCGGGGgUCCaCCUUGG-CGUaaUAC- -5'
5487 5' -55.8 NC_001798.1 + 21944 0.72 0.609936
Target:  5'- cCCGCCCCCuuuGGGcGGAG-CGCGggAUGa -3'
miRNA:   3'- -GGCGGGGG---UCCaCCUUgGCGUaaUAC- -5'
5487 5' -55.8 NC_001798.1 + 22081 0.76 0.409054
Target:  5'- cCCGCCCCCuuugGGGcGGAGCCGCc----- -3'
miRNA:   3'- -GGCGGGGG----UCCaCCUUGGCGuaauac -5'
5487 5' -55.8 NC_001798.1 + 23825 0.67 0.877933
Target:  5'- cCCGCCCCCGGGgcgcguGCUGUAc---- -3'
miRNA:   3'- -GGCGGGGGUCCaccu--UGGCGUaauac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.