miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5487 5' -55.8 NC_001798.1 + 5329 1.09 0.003202
Target:  5'- uCCGCCCCCAGGUGGAACCGCAUUAUGc -3'
miRNA:   3'- -GGCGGGGGUCCACCUUGGCGUAAUAC- -5'
5487 5' -55.8 NC_001798.1 + 5763 0.78 0.336281
Target:  5'- uCCGCCCCaaaGGGggcGGGGCCGCAggGUa -3'
miRNA:   3'- -GGCGGGGg--UCCa--CCUUGGCGUaaUAc -5'
5487 5' -55.8 NC_001798.1 + 5625 0.78 0.336281
Target:  5'- uCCGCCCCaaaGGGggcGGGGCCGCAggGUa -3'
miRNA:   3'- -GGCGGGGg--UCCa--CCUUGGCGUaaUAc -5'
5487 5' -55.8 NC_001798.1 + 89133 0.76 0.392051
Target:  5'- uCCGCCUCCAGGUGcgcgacggccucGGGCCGCAg---- -3'
miRNA:   3'- -GGCGGGGGUCCAC------------CUUGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 22081 0.76 0.409054
Target:  5'- cCCGCCCCCuuugGGGcGGAGCCGCc----- -3'
miRNA:   3'- -GGCGGGGG----UCCaCCUUGGCGuaauac -5'
5487 5' -55.8 NC_001798.1 + 116254 0.75 0.472002
Target:  5'- gCCGCCCCUcGuGUGGGACUGCGacggccUUAUGc -3'
miRNA:   3'- -GGCGGGGGuC-CACCUUGGCGU------AAUAC- -5'
5487 5' -55.8 NC_001798.1 + 44975 0.75 0.472002
Target:  5'- uCCGCCCUCggAGGcGGAGCCGCGg---- -3'
miRNA:   3'- -GGCGGGGG--UCCaCCUUGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 128428 0.74 0.490878
Target:  5'- aCCGCCUCCAcgcugcGGUGGGGCgCGCAggGUc -3'
miRNA:   3'- -GGCGGGGGU------CCACCUUG-GCGUaaUAc -5'
5487 5' -55.8 NC_001798.1 + 21808 0.74 0.490878
Target:  5'- cCCGCCUCgGGGcGGAGCCcGCGggAUGa -3'
miRNA:   3'- -GGCGGGGgUCCaCCUUGG-CGUaaUAC- -5'
5487 5' -55.8 NC_001798.1 + 32579 0.74 0.490878
Target:  5'- gCgGCCCCCGcGUGGAGCCGCc----- -3'
miRNA:   3'- -GgCGGGGGUcCACCUUGGCGuaauac -5'
5487 5' -55.8 NC_001798.1 + 121291 0.74 0.490878
Target:  5'- gCCGCCCCgAcGGUGGGgcgGCCGCGa---- -3'
miRNA:   3'- -GGCGGGGgU-CCACCU---UGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 118294 0.74 0.515923
Target:  5'- cCCGCCCCCcccAGGggggcuuggacugGGAGCCGCGa---- -3'
miRNA:   3'- -GGCGGGGG---UCCa------------CCUUGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 110505 0.73 0.559397
Target:  5'- aUCGCCCCCGGGUuucuGGCCGCGUc--- -3'
miRNA:   3'- -GGCGGGGGUCCAcc--UUGGCGUAauac -5'
5487 5' -55.8 NC_001798.1 + 138158 0.73 0.579508
Target:  5'- gCGCCCCCGGGUccuGGGGgCGCGa---- -3'
miRNA:   3'- gGCGGGGGUCCA---CCUUgGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 89464 0.73 0.589622
Target:  5'- aCCGCCCCUGGGUGu--CCgGCAggAUGa -3'
miRNA:   3'- -GGCGGGGGUCCACcuuGG-CGUaaUAC- -5'
5487 5' -55.8 NC_001798.1 + 148501 0.72 0.599767
Target:  5'- cCCGUCCCCGGGggcagagGGcguGCaUGCGUUGUGa -3'
miRNA:   3'- -GGCGGGGGUCCa------CCu--UG-GCGUAAUAC- -5'
5487 5' -55.8 NC_001798.1 + 57240 0.72 0.599767
Target:  5'- -gGCCCCCGGGcGGGGCCGaCAc---- -3'
miRNA:   3'- ggCGGGGGUCCaCCUUGGC-GUaauac -5'
5487 5' -55.8 NC_001798.1 + 21944 0.72 0.609936
Target:  5'- cCCGCCCCCuuuGGGcGGAG-CGCGggAUGa -3'
miRNA:   3'- -GGCGGGGG---UCCaCCUUgGCGUaaUAC- -5'
5487 5' -55.8 NC_001798.1 + 10580 0.72 0.650701
Target:  5'- gUCGCCCgCGGGgaacggGGGACUGUAUgcUAUGg -3'
miRNA:   3'- -GGCGGGgGUCCa-----CCUUGGCGUA--AUAC- -5'
5487 5' -55.8 NC_001798.1 + 31967 0.71 0.675079
Target:  5'- cUCGCCCCCcaggGGGUGGGggccaagagggcggcGCCGCGc---- -3'
miRNA:   3'- -GGCGGGGG----UCCACCU---------------UGGCGUaauac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.