miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5487 5' -55.8 NC_001798.1 + 153063 0.7 0.721139
Target:  5'- gCCGCCCCCuggggcGGGcGGAGCgGCGg---- -3'
miRNA:   3'- -GGCGGGGG------UCCaCCUUGgCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 150181 0.66 0.910706
Target:  5'- gCCGCCCCCuccgcggcguGG-GGGGCgGCAc---- -3'
miRNA:   3'- -GGCGGGGGu---------CCaCCUUGgCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 148906 0.69 0.805798
Target:  5'- cCCgGCCCCCcugcgcGGG-GGAGCUGCAUc--- -3'
miRNA:   3'- -GG-CGGGGG------UCCaCCUUGGCGUAauac -5'
5487 5' -55.8 NC_001798.1 + 148501 0.72 0.599767
Target:  5'- cCCGUCCCCGGGggcagagGGcguGCaUGCGUUGUGa -3'
miRNA:   3'- -GGCGGGGGUCCa------CCu--UG-GCGUAAUAC- -5'
5487 5' -55.8 NC_001798.1 + 145904 0.68 0.839748
Target:  5'- gCCGCgCCCCAccGGcGGGAUCGCGg---- -3'
miRNA:   3'- -GGCG-GGGGU--CCaCCUUGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 141164 0.68 0.839748
Target:  5'- aCCGCuCUCCGGG-GGAGCgUGCGUUc-- -3'
miRNA:   3'- -GGCG-GGGGUCCaCCUUG-GCGUAAuac -5'
5487 5' -55.8 NC_001798.1 + 138799 0.67 0.891723
Target:  5'- aCGCCCCCAGGc---GCUGCGUc--- -3'
miRNA:   3'- gGCGGGGGUCCaccuUGGCGUAauac -5'
5487 5' -55.8 NC_001798.1 + 138158 0.73 0.579508
Target:  5'- gCGCCCCCGGGUccuGGGGgCGCGa---- -3'
miRNA:   3'- gGCGGGGGUCCA---CCUUgGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 137978 0.67 0.863273
Target:  5'- gCGCCCCCGccUGGGcgcGCCGCAg---- -3'
miRNA:   3'- gGCGGGGGUccACCU---UGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 137141 0.66 0.922192
Target:  5'- aCCGCCCCCuggGGGUGacgucAACgCGCAg---- -3'
miRNA:   3'- -GGCGGGGG---UCCACc----UUG-GCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 131016 0.7 0.73097
Target:  5'- gCCGCCgCCAGGcgacGGGCCGCAUc--- -3'
miRNA:   3'- -GGCGGgGGUCCac--CUUGGCGUAauac -5'
5487 5' -55.8 NC_001798.1 + 129042 0.67 0.863273
Target:  5'- uCCGCCCCgGaucgggcgcuGGUGGAguuaaauaGCgGCGUUGUc -3'
miRNA:   3'- -GGCGGGGgU----------CCACCU--------UGgCGUAAUAc -5'
5487 5' -55.8 NC_001798.1 + 128428 0.74 0.490878
Target:  5'- aCCGCCUCCAcgcugcGGUGGGGCgCGCAggGUc -3'
miRNA:   3'- -GGCGGGGGU------CCACCUUG-GCGUaaUAc -5'
5487 5' -55.8 NC_001798.1 + 127295 0.66 0.927581
Target:  5'- aCGCCCUgGGGcagacgcugcUGGAGCUGCugGUUAg- -3'
miRNA:   3'- gGCGGGGgUCC----------ACCUUGGCG--UAAUac -5'
5487 5' -55.8 NC_001798.1 + 124356 0.68 0.823118
Target:  5'- uCCGCCCgaccagcgCCGGGUGGcGCCucuGCGUUcUGu -3'
miRNA:   3'- -GGCGGG--------GGUCCACCuUGG---CGUAAuAC- -5'
5487 5' -55.8 NC_001798.1 + 123402 0.66 0.910706
Target:  5'- -gGCCCCCcg--GGAGCCGCGg---- -3'
miRNA:   3'- ggCGGGGGuccaCCUUGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 121291 0.74 0.490878
Target:  5'- gCCGCCCCgAcGGUGGGgcgGCCGCGa---- -3'
miRNA:   3'- -GGCGGGGgU-CCACCU---UGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 118294 0.74 0.515923
Target:  5'- cCCGCCCCCcccAGGggggcuuggacugGGAGCCGCGa---- -3'
miRNA:   3'- -GGCGGGGG---UCCa------------CCUUGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 116254 0.75 0.472002
Target:  5'- gCCGCCCCUcGuGUGGGACUGCGacggccUUAUGc -3'
miRNA:   3'- -GGCGGGGGuC-CACCUUGGCGU------AAUAC- -5'
5487 5' -55.8 NC_001798.1 + 115332 0.68 0.81454
Target:  5'- cCCGCCCCCGGccacccGGAGCCccgcGCGUUc-- -3'
miRNA:   3'- -GGCGGGGGUCca----CCUUGG----CGUAAuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.