miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5487 5' -55.8 NC_001798.1 + 145904 0.68 0.839748
Target:  5'- gCCGCgCCCCAccGGcGGGAUCGCGg---- -3'
miRNA:   3'- -GGCG-GGGGU--CCaCCUUGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 7788 0.68 0.839748
Target:  5'- aCCGCCCCCGcuGGcgGGAGCCa------- -3'
miRNA:   3'- -GGCGGGGGU--CCa-CCUUGGcguaauac -5'
5487 5' -55.8 NC_001798.1 + 124356 0.68 0.823118
Target:  5'- uCCGCCCgaccagcgCCGGGUGGcGCCucuGCGUUcUGu -3'
miRNA:   3'- -GGCGGG--------GGUCCACCuUGG---CGUAAuAC- -5'
5487 5' -55.8 NC_001798.1 + 3551 0.68 0.823118
Target:  5'- gCCGCcauggcguaCCCCAGGUGGGGcacggcCCGCGc---- -3'
miRNA:   3'- -GGCG---------GGGGUCCACCUU------GGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 115332 0.68 0.81454
Target:  5'- cCCGCCCCCGGccacccGGAGCCccgcGCGUUc-- -3'
miRNA:   3'- -GGCGGGGGUCca----CCUUGG----CGUAAuac -5'
5487 5' -55.8 NC_001798.1 + 9643 0.68 0.81454
Target:  5'- aCCGCCCCgAGGcgcaGcGGGCCGCGc---- -3'
miRNA:   3'- -GGCGGGGgUCCa---C-CUUGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 85246 0.69 0.805798
Target:  5'- cCCGCCCCCccgcGGccgcgcGGGGCCGCGc---- -3'
miRNA:   3'- -GGCGGGGGu---CCa-----CCUUGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 148906 0.69 0.805798
Target:  5'- cCCgGCCCCCcugcgcGGG-GGAGCUGCAUc--- -3'
miRNA:   3'- -GG-CGGGGG------UCCaCCUUGGCGUAauac -5'
5487 5' -55.8 NC_001798.1 + 81999 0.69 0.7969
Target:  5'- gUCGUCCCCGGG-GGcGACCGCc----- -3'
miRNA:   3'- -GGCGGGGGUCCaCC-UUGGCGuaauac -5'
5487 5' -55.8 NC_001798.1 + 87874 0.69 0.778669
Target:  5'- gCCGCCCCCagcAGGUGcGAGaaguaauaguCCGUGUUGa- -3'
miRNA:   3'- -GGCGGGGG---UCCAC-CUU----------GGCGUAAUac -5'
5487 5' -55.8 NC_001798.1 + 29488 0.69 0.778669
Target:  5'- -gGUCCCCGGGgacGGGGCCGCc----- -3'
miRNA:   3'- ggCGGGGGUCCa--CCUUGGCGuaauac -5'
5487 5' -55.8 NC_001798.1 + 27214 0.69 0.777744
Target:  5'- -aGCCCCCGGGgcgGGGcgcgggggaggcgGCCGCGg---- -3'
miRNA:   3'- ggCGGGGGUCCa--CCU-------------UGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 66323 0.69 0.769354
Target:  5'- -gGCCuCCCGGGUacGGAugCGCAg-GUGg -3'
miRNA:   3'- ggCGG-GGGUCCA--CCUugGCGUaaUAC- -5'
5487 5' -55.8 NC_001798.1 + 106014 0.7 0.750369
Target:  5'- gUCGCUCUCuGGUGGGGCCGgAUg--- -3'
miRNA:   3'- -GGCGGGGGuCCACCUUGGCgUAauac -5'
5487 5' -55.8 NC_001798.1 + 98863 0.7 0.750369
Target:  5'- cCCGCCCCCGacgggcgccacGGUGGugcaguuugagcAGCCGCGc---- -3'
miRNA:   3'- -GGCGGGGGU-----------CCACC------------UUGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 31679 0.7 0.740717
Target:  5'- gCCGCCCgCCGugccGGUGGAcgcgcACCGCGc---- -3'
miRNA:   3'- -GGCGGG-GGU----CCACCU-----UGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 131016 0.7 0.73097
Target:  5'- gCCGCCgCCAGGcgacGGGCCGCAUc--- -3'
miRNA:   3'- -GGCGGgGGUCCac--CUUGGCGUAauac -5'
5487 5' -55.8 NC_001798.1 + 108682 0.7 0.721139
Target:  5'- gCCGCCCCCGGGgccgcCCGCGg---- -3'
miRNA:   3'- -GGCGGGGGUCCaccuuGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 81784 0.7 0.721139
Target:  5'- uCCGCCCCCcccgagGGGUGGcguCCGCc----- -3'
miRNA:   3'- -GGCGGGGG------UCCACCuu-GGCGuaauac -5'
5487 5' -55.8 NC_001798.1 + 153063 0.7 0.721139
Target:  5'- gCCGCCCCCuggggcGGGcGGAGCgGCGg---- -3'
miRNA:   3'- -GGCGGGGG------UCCaCCUUGgCGUaauac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.