miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5487 5' -55.8 NC_001798.1 + 10684 0.67 0.884939
Target:  5'- gCGCCaCCCAcgacGGgcgcagGGGACCGCAg---- -3'
miRNA:   3'- gGCGG-GGGU----CCa-----CCUUGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 31635 0.67 0.884939
Target:  5'- gCCGCCCCCGuGGUGu--CUGCGa---- -3'
miRNA:   3'- -GGCGGGGGU-CCACcuuGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 62437 0.67 0.884939
Target:  5'- uCCaGCCCCCGgacgucgccGGUGG-GCCGCGc---- -3'
miRNA:   3'- -GG-CGGGGGU---------CCACCuUGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 23825 0.67 0.877933
Target:  5'- cCCGCCCCCGGGgcgcguGCUGUAc---- -3'
miRNA:   3'- -GGCGGGGGUCCaccu--UGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 31477 0.67 0.877933
Target:  5'- gCCGCCCCgCGGGccccGGGCCGCu----- -3'
miRNA:   3'- -GGCGGGG-GUCCac--CUUGGCGuaauac -5'
5487 5' -55.8 NC_001798.1 + 25153 0.67 0.877933
Target:  5'- gCCGCCCCUcccgcgGGGGCCGCGc---- -3'
miRNA:   3'- -GGCGGGGGucca--CCUUGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 9345 0.67 0.877933
Target:  5'- aCGCCCCUcgcuauggGGGUauacagacGGAGCCGUug-GUGa -3'
miRNA:   3'- gGCGGGGG--------UCCA--------CCUUGGCGuaaUAC- -5'
5487 5' -55.8 NC_001798.1 + 82809 0.67 0.870709
Target:  5'- cUCGaCCCCCucccaccGGAACCGCAUUGc- -3'
miRNA:   3'- -GGC-GGGGGucca---CCUUGGCGUAAUac -5'
5487 5' -55.8 NC_001798.1 + 40817 0.67 0.869975
Target:  5'- gCGCCCCCuGGgggccgcUGGuuCCGCGUUuuUGg -3'
miRNA:   3'- gGCGGGGGuCC-------ACCuuGGCGUAAu-AC- -5'
5487 5' -55.8 NC_001798.1 + 84216 0.67 0.863273
Target:  5'- gCGCCCCCcgGGGcgccgUGGGGCCGguUa--- -3'
miRNA:   3'- gGCGGGGG--UCC-----ACCUUGGCguAauac -5'
5487 5' -55.8 NC_001798.1 + 137978 0.67 0.863273
Target:  5'- gCGCCCCCGccUGGGcgcGCCGCAg---- -3'
miRNA:   3'- gGCGGGGGUccACCU---UGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 2105 0.67 0.863273
Target:  5'- cCCGCCCCCGGcGcGGc-CCGCGg---- -3'
miRNA:   3'- -GGCGGGGGUC-CaCCuuGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 129042 0.67 0.863273
Target:  5'- uCCGCCCCgGaucgggcgcuGGUGGAguuaaauaGCgGCGUUGUc -3'
miRNA:   3'- -GGCGGGGgU----------CCACCU--------UGgCGUAAUAc -5'
5487 5' -55.8 NC_001798.1 + 91455 0.68 0.85563
Target:  5'- cCCGCCCaCCcaacagcucgGGGUGGGAUgGCGgugccgAUGu -3'
miRNA:   3'- -GGCGGG-GG----------UCCACCUUGgCGUaa----UAC- -5'
5487 5' -55.8 NC_001798.1 + 86442 0.68 0.85563
Target:  5'- gCGCagCCCGGGgacgGGGGCCGguUcGUGa -3'
miRNA:   3'- gGCGg-GGGUCCa---CCUUGGCguAaUAC- -5'
5487 5' -55.8 NC_001798.1 + 227 0.68 0.854855
Target:  5'- cCCGCCCCCgcgcggcAGGacgGGGACUaGCAggcUGUGc -3'
miRNA:   3'- -GGCGGGGG-------UCCa--CCUUGG-CGUa--AUAC- -5'
5487 5' -55.8 NC_001798.1 + 3886 0.68 0.847786
Target:  5'- gCGCCCCgGGGgcggGGGGCCGg------ -3'
miRNA:   3'- gGCGGGGgUCCa---CCUUGGCguaauac -5'
5487 5' -55.8 NC_001798.1 + 28547 0.68 0.847786
Target:  5'- cCCGCCCgCAGGUGuGcuucucGCCGCGc---- -3'
miRNA:   3'- -GGCGGGgGUCCAC-Cu-----UGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 145904 0.68 0.839748
Target:  5'- gCCGCgCCCCAccGGcGGGAUCGCGg---- -3'
miRNA:   3'- -GGCG-GGGGU--CCaCCUUGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 141164 0.68 0.839748
Target:  5'- aCCGCuCUCCGGG-GGAGCgUGCGUUc-- -3'
miRNA:   3'- -GGCG-GGGGUCCaCCUUG-GCGUAAuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.