miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5489 5' -48.6 NC_001798.1 + 136141 0.66 0.997913
Target:  5'- ----gUGGGGCGAGG-GCGGGaGCUu -3'
miRNA:   3'- uaauaAUCCCGUUUCaCGCUCgUGAc -5'
5489 5' -48.6 NC_001798.1 + 130407 0.66 0.997496
Target:  5'- -----gAGGGCAAAGgcgGCGAcgaGCGCc- -3'
miRNA:   3'- uaauaaUCCCGUUUCa--CGCU---CGUGac -5'
5489 5' -48.6 NC_001798.1 + 148398 0.66 0.997011
Target:  5'- ------cGGGCAGGuGUGCGGGCGg-- -3'
miRNA:   3'- uaauaauCCCGUUU-CACGCUCGUgac -5'
5489 5' -48.6 NC_001798.1 + 148291 0.66 0.997011
Target:  5'- ------cGGGCAGGuGUGCGGGCGg-- -3'
miRNA:   3'- uaauaauCCCGUUU-CACGCUCGUgac -5'
5489 5' -48.6 NC_001798.1 + 85829 0.67 0.996451
Target:  5'- -----gGGGGCGGGGgcggGCGGGgGCUc -3'
miRNA:   3'- uaauaaUCCCGUUUCa---CGCUCgUGAc -5'
5489 5' -48.6 NC_001798.1 + 146430 0.67 0.996451
Target:  5'- ------cGGGCAGAGUGCgGAGCc--- -3'
miRNA:   3'- uaauaauCCCGUUUCACG-CUCGugac -5'
5489 5' -48.6 NC_001798.1 + 146089 0.67 0.995807
Target:  5'- -----cGGGGCGAGGcggGCGGGCGaaGg -3'
miRNA:   3'- uaauaaUCCCGUUUCa--CGCUCGUgaC- -5'
5489 5' -48.6 NC_001798.1 + 32717 0.67 0.995807
Target:  5'- -----cAGGGCAcccuGGUGgGcGCGCUGg -3'
miRNA:   3'- uaauaaUCCCGUu---UCACgCuCGUGAC- -5'
5489 5' -48.6 NC_001798.1 + 97537 0.67 0.995071
Target:  5'- -----gGGGGCGGAG-GCGuGGCGCg- -3'
miRNA:   3'- uaauaaUCCCGUUUCaCGC-UCGUGac -5'
5489 5' -48.6 NC_001798.1 + 2268 0.67 0.995071
Target:  5'- -----gGGGGCGGGGcgGCGcAGCGCg- -3'
miRNA:   3'- uaauaaUCCCGUUUCa-CGC-UCGUGac -5'
5489 5' -48.6 NC_001798.1 + 31152 0.67 0.993285
Target:  5'- -----gGGGGCGGcGGUGCGGGgGCg- -3'
miRNA:   3'- uaauaaUCCCGUU-UCACGCUCgUGac -5'
5489 5' -48.6 NC_001798.1 + 148510 0.68 0.989673
Target:  5'- -----gGGGGCAGAGgGCGuGCAUg- -3'
miRNA:   3'- uaauaaUCCCGUUUCaCGCuCGUGac -5'
5489 5' -48.6 NC_001798.1 + 148443 0.69 0.982684
Target:  5'- ------cGGGCGuAAGUGCGGGUGCa- -3'
miRNA:   3'- uaauaauCCCGU-UUCACGCUCGUGac -5'
5489 5' -48.6 NC_001798.1 + 33500 0.69 0.980479
Target:  5'- ----gUGGGGCGGGG-GCGAGgGCg- -3'
miRNA:   3'- uaauaAUCCCGUUUCaCGCUCgUGac -5'
5489 5' -48.6 NC_001798.1 + 12721 0.69 0.980479
Target:  5'- -----gGGGGCGuGGUGCG-GCGCg- -3'
miRNA:   3'- uaauaaUCCCGUuUCACGCuCGUGac -5'
5489 5' -48.6 NC_001798.1 + 34082 0.69 0.978072
Target:  5'- gGUUGUUGGGGgGGGGUGaCcGGCGCg- -3'
miRNA:   3'- -UAAUAAUCCCgUUUCAC-GcUCGUGac -5'
5489 5' -48.6 NC_001798.1 + 22028 0.7 0.972612
Target:  5'- -cUAUUAGGaCGAAGUGCGAaCGCUu -3'
miRNA:   3'- uaAUAAUCCcGUUUCACGCUcGUGAc -5'
5489 5' -48.6 NC_001798.1 + 21891 0.7 0.972612
Target:  5'- -cUAUUAGGaCGAAGUGCGAaCGCUu -3'
miRNA:   3'- uaAUAAUCCcGUUUCACGCUcGUGAc -5'
5489 5' -48.6 NC_001798.1 + 148426 0.7 0.969541
Target:  5'- -----cGGGGCGGGG-GUGGGCACg- -3'
miRNA:   3'- uaauaaUCCCGUUUCaCGCUCGUGac -5'
5489 5' -48.6 NC_001798.1 + 67938 0.7 0.962677
Target:  5'- -----aGGGGUggGGUGCGAucguGUGCUGa -3'
miRNA:   3'- uaauaaUCCCGuuUCACGCU----CGUGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.