Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5489 | 5' | -48.6 | NC_001798.1 | + | 136141 | 0.66 | 0.997913 |
Target: 5'- ----gUGGGGCGAGG-GCGGGaGCUu -3' miRNA: 3'- uaauaAUCCCGUUUCaCGCUCgUGAc -5' |
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5489 | 5' | -48.6 | NC_001798.1 | + | 130407 | 0.66 | 0.997496 |
Target: 5'- -----gAGGGCAAAGgcgGCGAcgaGCGCc- -3' miRNA: 3'- uaauaaUCCCGUUUCa--CGCU---CGUGac -5' |
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5489 | 5' | -48.6 | NC_001798.1 | + | 148398 | 0.66 | 0.997011 |
Target: 5'- ------cGGGCAGGuGUGCGGGCGg-- -3' miRNA: 3'- uaauaauCCCGUUU-CACGCUCGUgac -5' |
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5489 | 5' | -48.6 | NC_001798.1 | + | 148291 | 0.66 | 0.997011 |
Target: 5'- ------cGGGCAGGuGUGCGGGCGg-- -3' miRNA: 3'- uaauaauCCCGUUU-CACGCUCGUgac -5' |
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5489 | 5' | -48.6 | NC_001798.1 | + | 146430 | 0.67 | 0.996451 |
Target: 5'- ------cGGGCAGAGUGCgGAGCc--- -3' miRNA: 3'- uaauaauCCCGUUUCACG-CUCGugac -5' |
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5489 | 5' | -48.6 | NC_001798.1 | + | 85829 | 0.67 | 0.996451 |
Target: 5'- -----gGGGGCGGGGgcggGCGGGgGCUc -3' miRNA: 3'- uaauaaUCCCGUUUCa---CGCUCgUGAc -5' |
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5489 | 5' | -48.6 | NC_001798.1 | + | 146089 | 0.67 | 0.995807 |
Target: 5'- -----cGGGGCGAGGcggGCGGGCGaaGg -3' miRNA: 3'- uaauaaUCCCGUUUCa--CGCUCGUgaC- -5' |
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5489 | 5' | -48.6 | NC_001798.1 | + | 32717 | 0.67 | 0.995807 |
Target: 5'- -----cAGGGCAcccuGGUGgGcGCGCUGg -3' miRNA: 3'- uaauaaUCCCGUu---UCACgCuCGUGAC- -5' |
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5489 | 5' | -48.6 | NC_001798.1 | + | 97537 | 0.67 | 0.995071 |
Target: 5'- -----gGGGGCGGAG-GCGuGGCGCg- -3' miRNA: 3'- uaauaaUCCCGUUUCaCGC-UCGUGac -5' |
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5489 | 5' | -48.6 | NC_001798.1 | + | 2268 | 0.67 | 0.995071 |
Target: 5'- -----gGGGGCGGGGcgGCGcAGCGCg- -3' miRNA: 3'- uaauaaUCCCGUUUCa-CGC-UCGUGac -5' |
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5489 | 5' | -48.6 | NC_001798.1 | + | 31152 | 0.67 | 0.993285 |
Target: 5'- -----gGGGGCGGcGGUGCGGGgGCg- -3' miRNA: 3'- uaauaaUCCCGUU-UCACGCUCgUGac -5' |
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5489 | 5' | -48.6 | NC_001798.1 | + | 148510 | 0.68 | 0.989673 |
Target: 5'- -----gGGGGCAGAGgGCGuGCAUg- -3' miRNA: 3'- uaauaaUCCCGUUUCaCGCuCGUGac -5' |
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5489 | 5' | -48.6 | NC_001798.1 | + | 148443 | 0.69 | 0.982684 |
Target: 5'- ------cGGGCGuAAGUGCGGGUGCa- -3' miRNA: 3'- uaauaauCCCGU-UUCACGCUCGUGac -5' |
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5489 | 5' | -48.6 | NC_001798.1 | + | 33500 | 0.69 | 0.980479 |
Target: 5'- ----gUGGGGCGGGG-GCGAGgGCg- -3' miRNA: 3'- uaauaAUCCCGUUUCaCGCUCgUGac -5' |
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5489 | 5' | -48.6 | NC_001798.1 | + | 12721 | 0.69 | 0.980479 |
Target: 5'- -----gGGGGCGuGGUGCG-GCGCg- -3' miRNA: 3'- uaauaaUCCCGUuUCACGCuCGUGac -5' |
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5489 | 5' | -48.6 | NC_001798.1 | + | 34082 | 0.69 | 0.978072 |
Target: 5'- gGUUGUUGGGGgGGGGUGaCcGGCGCg- -3' miRNA: 3'- -UAAUAAUCCCgUUUCAC-GcUCGUGac -5' |
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5489 | 5' | -48.6 | NC_001798.1 | + | 21891 | 0.7 | 0.972612 |
Target: 5'- -cUAUUAGGaCGAAGUGCGAaCGCUu -3' miRNA: 3'- uaAUAAUCCcGUUUCACGCUcGUGAc -5' |
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5489 | 5' | -48.6 | NC_001798.1 | + | 22028 | 0.7 | 0.972612 |
Target: 5'- -cUAUUAGGaCGAAGUGCGAaCGCUu -3' miRNA: 3'- uaAUAAUCCcGUUUCACGCUcGUGAc -5' |
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5489 | 5' | -48.6 | NC_001798.1 | + | 148426 | 0.7 | 0.969541 |
Target: 5'- -----cGGGGCGGGG-GUGGGCACg- -3' miRNA: 3'- uaauaaUCCCGUUUCaCGCUCGUGac -5' |
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5489 | 5' | -48.6 | NC_001798.1 | + | 67938 | 0.7 | 0.962677 |
Target: 5'- -----aGGGGUggGGUGCGAucguGUGCUGa -3' miRNA: 3'- uaauaaUCCCGuuUCACGCU----CGUGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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