miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5490 5' -53 NC_001798.1 + 34582 0.66 0.975592
Target:  5'- gGCUC-ACGCGGCGCg-GCGucUCGg -3'
miRNA:   3'- gCGAGuUGUGCUGCGgaCGCuuAGUa -5'
5490 5' -53 NC_001798.1 + 65128 0.66 0.972902
Target:  5'- --aUCAGCACGcACGCCUGCacggcGUCGc -3'
miRNA:   3'- gcgAGUUGUGC-UGCGGACGcu---UAGUa -5'
5490 5' -53 NC_001798.1 + 48874 0.66 0.970004
Target:  5'- gCGCUCgGGCACGucucauuCGCCUcuCGGAUCGUu -3'
miRNA:   3'- -GCGAG-UUGUGCu------GCGGAc-GCUUAGUA- -5'
5490 5' -53 NC_001798.1 + 136560 0.66 0.970004
Target:  5'- aGCUUccCAUGACGCCgGcCGggUUAUa -3'
miRNA:   3'- gCGAGuuGUGCUGCGGaC-GCuuAGUA- -5'
5490 5' -53 NC_001798.1 + 2431 0.66 0.970004
Target:  5'- gGCUgGGCcccggcggcugGCGGCGCCagccgcccUGCGggUCGg -3'
miRNA:   3'- gCGAgUUG-----------UGCUGCGG--------ACGCuuAGUa -5'
5490 5' -53 NC_001798.1 + 128602 0.66 0.96689
Target:  5'- gGCgUCAACgACGACGCCgacgccggGCGcuUCGUc -3'
miRNA:   3'- gCG-AGUUG-UGCUGCGGa-------CGCuuAGUA- -5'
5490 5' -53 NC_001798.1 + 153788 0.66 0.963555
Target:  5'- gCGCUCcuuGCGCGGCGgCgGCGGGgggCAg -3'
miRNA:   3'- -GCGAGu--UGUGCUGCgGaCGCUUa--GUa -5'
5490 5' -53 NC_001798.1 + 26331 0.66 0.959992
Target:  5'- gCGCUgGgGCGCGACGCCgUGCGcggCGg -3'
miRNA:   3'- -GCGAgU-UGUGCUGCGG-ACGCuuaGUa -5'
5490 5' -53 NC_001798.1 + 138001 0.67 0.956197
Target:  5'- aGCUCGcgguCGCG-CGCCUGCagcuGggUCGc -3'
miRNA:   3'- gCGAGUu---GUGCuGCGGACG----CuuAGUa -5'
5490 5' -53 NC_001798.1 + 120376 0.67 0.952163
Target:  5'- gGCUguGCACGACGCagcggGCGAuGUCc- -3'
miRNA:   3'- gCGAguUGUGCUGCGga---CGCU-UAGua -5'
5490 5' -53 NC_001798.1 + 97741 0.67 0.952163
Target:  5'- aGCUCGAgAaGAUG-CUGCGggUCAg -3'
miRNA:   3'- gCGAGUUgUgCUGCgGACGCuuAGUa -5'
5490 5' -53 NC_001798.1 + 45048 0.67 0.947887
Target:  5'- aCGCUCG--ACGACGCCcuaGAGUCGc -3'
miRNA:   3'- -GCGAGUugUGCUGCGGacgCUUAGUa -5'
5490 5' -53 NC_001798.1 + 132690 0.67 0.947887
Target:  5'- aCGC-CGACGCGGCGCaggcGCGGggGUCGc -3'
miRNA:   3'- -GCGaGUUGUGCUGCGga--CGCU--UAGUa -5'
5490 5' -53 NC_001798.1 + 79267 0.67 0.943366
Target:  5'- aGUUCGACGCGGCGgCC-GCGGAc--- -3'
miRNA:   3'- gCGAGUUGUGCUGC-GGaCGCUUagua -5'
5490 5' -53 NC_001798.1 + 76522 0.67 0.938597
Target:  5'- aCGCccUCGACGCGGCGCUcGCGcagCAg -3'
miRNA:   3'- -GCG--AGUUGUGCUGCGGaCGCuuaGUa -5'
5490 5' -53 NC_001798.1 + 61979 0.68 0.922783
Target:  5'- gGgUCAGCuggaggccgACGACGCCUGCGcgaaccucuAUCAUa -3'
miRNA:   3'- gCgAGUUG---------UGCUGCGGACGCu--------UAGUA- -5'
5490 5' -53 NC_001798.1 + 103298 0.68 0.922783
Target:  5'- gCGCUCAAaaauaGCGGCGCUgGCGGccGUCu- -3'
miRNA:   3'- -GCGAGUUg----UGCUGCGGaCGCU--UAGua -5'
5490 5' -53 NC_001798.1 + 25823 0.68 0.922216
Target:  5'- uGCU-GGC-CGGCGCCUGCGAccgccgccucaucGUCGUc -3'
miRNA:   3'- gCGAgUUGuGCUGCGGACGCU-------------UAGUA- -5'
5490 5' -53 NC_001798.1 + 14790 0.68 0.910981
Target:  5'- aCGCUCGgguGCGCGuauCGCCUGCGc----- -3'
miRNA:   3'- -GCGAGU---UGUGCu--GCGGACGCuuagua -5'
5490 5' -53 NC_001798.1 + 131926 0.7 0.872715
Target:  5'- cCGCgUCGACGCGuugaugcuGCGCCUgcugcgcacgugcccGCGGAUCAUc -3'
miRNA:   3'- -GCG-AGUUGUGC--------UGCGGA---------------CGCUUAGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.