miRNA display CGI


Results 1 - 20 of 458 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5491 3' -63.6 NC_001798.1 + 14791 0.88 0.020237
Target:  5'- cGCUCGGguGCGCguAUCGCCUGCGCCc -3'
miRNA:   3'- -CGGGCCguCGCGguUGGCGGACGCGG- -5'
5491 3' -63.6 NC_001798.1 + 74034 0.86 0.026971
Target:  5'- aCCCGGCGGCGCgCGGCgGCCUGCGUUg -3'
miRNA:   3'- cGGGCCGUCGCG-GUUGgCGGACGCGG- -5'
5491 3' -63.6 NC_001798.1 + 2444 0.84 0.043043
Target:  5'- cGgCUGGCGGCGCCAGCCGCcCUGCGg- -3'
miRNA:   3'- -CgGGCCGUCGCGGUUGGCG-GACGCgg -5'
5491 3' -63.6 NC_001798.1 + 37182 0.83 0.047726
Target:  5'- cGCUCGGC-GCGCCAGgCGCC-GCGCCg -3'
miRNA:   3'- -CGGGCCGuCGCGGUUgGCGGaCGCGG- -5'
5491 3' -63.6 NC_001798.1 + 2623 0.82 0.054281
Target:  5'- cGCCCGGCGGCGCCcuGGCCGgggcggggcuCUUGCGCUu -3'
miRNA:   3'- -CGGGCCGUCGCGG--UUGGC----------GGACGCGG- -5'
5491 3' -63.6 NC_001798.1 + 3144 0.81 0.063307
Target:  5'- cGCgCCGGCcGcCGCCAccACCGCCgGCGCCg -3'
miRNA:   3'- -CG-GGCCGuC-GCGGU--UGGCGGaCGCGG- -5'
5491 3' -63.6 NC_001798.1 + 25455 0.81 0.063307
Target:  5'- cCCCGGCGgcGCGCCcGCCGCCUucggcccgcugcGCGCCu -3'
miRNA:   3'- cGGGCCGU--CGCGGuUGGCGGA------------CGCGG- -5'
5491 3' -63.6 NC_001798.1 + 61875 0.8 0.075673
Target:  5'- aGCCCGGCGgcccccucgggcGCGCCcucgaAGCCGgcCCUGCGCCu -3'
miRNA:   3'- -CGGGCCGU------------CGCGG-----UUGGC--GGACGCGG- -5'
5491 3' -63.6 NC_001798.1 + 9543 0.8 0.077226
Target:  5'- gGCCCGGCuuuuaaccgccCGCCAggAgCGCCUGCGCCa -3'
miRNA:   3'- -CGGGCCGuc---------GCGGU--UgGCGGACGCGG- -5'
5491 3' -63.6 NC_001798.1 + 110896 0.8 0.079612
Target:  5'- aCCCGGCGGUucgcgugcgGCCAGCCGCCccCGCCg -3'
miRNA:   3'- cGGGCCGUCG---------CGGUUGGCGGacGCGG- -5'
5491 3' -63.6 NC_001798.1 + 4053 0.8 0.083747
Target:  5'- gGCCCGGCGGCGCUccaGGCgGCCcgcgGuCGCCg -3'
miRNA:   3'- -CGGGCCGUCGCGG---UUGgCGGa---C-GCGG- -5'
5491 3' -63.6 NC_001798.1 + 14819 0.79 0.085674
Target:  5'- cGCCCGGCcGCGCCAaaguuguGCUGCCaagGCGaCCa -3'
miRNA:   3'- -CGGGCCGuCGCGGU-------UGGCGGa--CGC-GG- -5'
5491 3' -63.6 NC_001798.1 + 34853 0.79 0.085891
Target:  5'- cGCCgGGCGGgggaCGCCuuCCGCCcgGCGCCg -3'
miRNA:   3'- -CGGgCCGUC----GCGGuuGGCGGa-CGCGG- -5'
5491 3' -63.6 NC_001798.1 + 1505 0.79 0.085891
Target:  5'- cGCCCgaGGCGGCGgcCCGGCCGuCCaGCGCCg -3'
miRNA:   3'- -CGGG--CCGUCGC--GGUUGGC-GGaCGCGG- -5'
5491 3' -63.6 NC_001798.1 + 145418 0.79 0.087865
Target:  5'- cGCCCGGCcgccgcGCGCCcccgcccGGCCGCCgcGCGCCc -3'
miRNA:   3'- -CGGGCCGu-----CGCGG-------UUGGCGGa-CGCGG- -5'
5491 3' -63.6 NC_001798.1 + 145460 0.79 0.087865
Target:  5'- cGCCCGGCcgccgcGCGCCcccgcccGGCCGCCgcGCGCCc -3'
miRNA:   3'- -CGGGCCGu-----CGCGG-------UUGGCGGa-CGCGG- -5'
5491 3' -63.6 NC_001798.1 + 145502 0.79 0.087865
Target:  5'- cGCCCGGCcgccgcGCGCCcccgcccGGCCGCCgcGCGCCc -3'
miRNA:   3'- -CGGGCCGu-----CGCGG-------UUGGCGGa-CGCGG- -5'
5491 3' -63.6 NC_001798.1 + 80791 0.79 0.092639
Target:  5'- cCCCGGCGG-GCCGgacGCCGCCcUGCGCg -3'
miRNA:   3'- cGGGCCGUCgCGGU---UGGCGG-ACGCGg -5'
5491 3' -63.6 NC_001798.1 + 28984 0.79 0.097414
Target:  5'- cGCCCcagggGGCGGCGCCGGCCaaCCgcGCGCCg -3'
miRNA:   3'- -CGGG-----CCGUCGCGGUUGGc-GGa-CGCGG- -5'
5491 3' -63.6 NC_001798.1 + 78848 0.78 0.099888
Target:  5'- gGCgCGGCA-CGCCGGCCGCCUggggGCGCUc -3'
miRNA:   3'- -CGgGCCGUcGCGGUUGGCGGA----CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.