miRNA display CGI


Results 1 - 20 of 458 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5491 3' -63.6 NC_001798.1 + 130 0.69 0.377894
Target:  5'- cCCCGGa---GCCGGCCGCUcccccgcggGCGCCg -3'
miRNA:   3'- cGGGCCgucgCGGUUGGCGGa--------CGCGG- -5'
5491 3' -63.6 NC_001798.1 + 168 0.66 0.55301
Target:  5'- cCCCcGC-GCGCCGcgggGCUGCCUucccgcggGCGCCc -3'
miRNA:   3'- cGGGcCGuCGCGGU----UGGCGGA--------CGCGG- -5'
5491 3' -63.6 NC_001798.1 + 457 0.69 0.377894
Target:  5'- gGUCCcGCGGcCGCCucccccgcGGCCGCCUcccccGCGCCc -3'
miRNA:   3'- -CGGGcCGUC-GCGG--------UUGGCGGA-----CGCGG- -5'
5491 3' -63.6 NC_001798.1 + 1141 0.7 0.333055
Target:  5'- cGCCuCGGCGGCgugGCCAGCC-CC-GCGgCg -3'
miRNA:   3'- -CGG-GCCGUCG---CGGUUGGcGGaCGCgG- -5'
5491 3' -63.6 NC_001798.1 + 1345 0.77 0.134552
Target:  5'- gGCCCGcGCAGCuccGCCgGGCCGCCgcgcacgGCGUCg -3'
miRNA:   3'- -CGGGC-CGUCG---CGG-UUGGCGGa------CGCGG- -5'
5491 3' -63.6 NC_001798.1 + 1384 0.69 0.418239
Target:  5'- cGCCC--CAGCGCCAcguagacggGCCGCagcggcGCGCCc -3'
miRNA:   3'- -CGGGccGUCGCGGU---------UGGCGga----CGCGG- -5'
5491 3' -63.6 NC_001798.1 + 1430 0.66 0.591392
Target:  5'- aGCgCGcGCAgGCGCgGugCGagUGCGCCu -3'
miRNA:   3'- -CGgGC-CGU-CGCGgUugGCggACGCGG- -5'
5491 3' -63.6 NC_001798.1 + 1472 0.78 0.105015
Target:  5'- aGUCCGGC-GCGCCGGgCGCCaugGCGUCg -3'
miRNA:   3'- -CGGGCCGuCGCGGUUgGCGGa--CGCGG- -5'
5491 3' -63.6 NC_001798.1 + 1505 0.79 0.085891
Target:  5'- cGCCCgaGGCGGCGgcCCGGCCGuCCaGCGCCg -3'
miRNA:   3'- -CGGG--CCGUCGC--GGUUGGC-GGaCGCGG- -5'
5491 3' -63.6 NC_001798.1 + 1828 0.68 0.435094
Target:  5'- gGCCCgucGGCGG-GCCAGuCCGCg-GCGCg -3'
miRNA:   3'- -CGGG---CCGUCgCGGUU-GGCGgaCGCGg -5'
5491 3' -63.6 NC_001798.1 + 2028 0.67 0.506163
Target:  5'- gGCCC-GCAGaGCCGGuuGCCcaggGcCGCCa -3'
miRNA:   3'- -CGGGcCGUCgCGGUUggCGGa---C-GCGG- -5'
5491 3' -63.6 NC_001798.1 + 2137 0.66 0.562545
Target:  5'- cGCCCGGCAGCGgCGaguagaggAUCaCCacGCGCa -3'
miRNA:   3'- -CGGGCCGUCGCgGU--------UGGcGGa-CGCGg -5'
5491 3' -63.6 NC_001798.1 + 2182 0.68 0.443668
Target:  5'- gGUCgGGCaccuGGCGCauccaGGCCGCCgcgcgGCGCa -3'
miRNA:   3'- -CGGgCCG----UCGCGg----UUGGCGGa----CGCGg -5'
5491 3' -63.6 NC_001798.1 + 2378 0.71 0.314873
Target:  5'- gGCCCGcGgGGCGCaguaggccuccagggCGGCgGCCgaggGCGCCg -3'
miRNA:   3'- -CGGGC-CgUCGCG---------------GUUGgCGGa---CGCGG- -5'
5491 3' -63.6 NC_001798.1 + 2444 0.84 0.043043
Target:  5'- cGgCUGGCGGCGCCAGCCGCcCUGCGg- -3'
miRNA:   3'- -CgGGCCGUCGCGGUUGGCG-GACGCgg -5'
5491 3' -63.6 NC_001798.1 + 2476 0.68 0.443668
Target:  5'- gGCCCucGGCGG-GCCGGCgGgUCaGCGCCg -3'
miRNA:   3'- -CGGG--CCGUCgCGGUUGgC-GGaCGCGG- -5'
5491 3' -63.6 NC_001798.1 + 2623 0.82 0.054281
Target:  5'- cGCCCGGCGGCGCCcuGGCCGgggcggggcuCUUGCGCUu -3'
miRNA:   3'- -CGGGCCGUCGCGG--UUGGC----------GGACGCGG- -5'
5491 3' -63.6 NC_001798.1 + 2803 0.71 0.319001
Target:  5'- uCCgCGGCAGCGCCgGGCCcaggGCCccgGCGaCCa -3'
miRNA:   3'- cGG-GCCGUCGCGG-UUGG----CGGa--CGC-GG- -5'
5491 3' -63.6 NC_001798.1 + 2858 0.69 0.385752
Target:  5'- gGCCaCGGCGGCcUCGcuGCCGCCggccacGCGCa -3'
miRNA:   3'- -CGG-GCCGUCGcGGU--UGGCGGa-----CGCGg -5'
5491 3' -63.6 NC_001798.1 + 3031 0.7 0.354976
Target:  5'- gGCuCCGGcCAGCcccgGCaCGGCCGCCagGuCGCCg -3'
miRNA:   3'- -CG-GGCC-GUCG----CG-GUUGGCGGa-C-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.