miRNA display CGI


Results 21 - 40 of 458 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5491 3' -63.6 NC_001798.1 + 3144 0.81 0.063307
Target:  5'- cGCgCCGGCcGcCGCCAccACCGCCgGCGCCg -3'
miRNA:   3'- -CG-GGCCGuC-GCGGU--UGGCGGaCGCGG- -5'
5491 3' -63.6 NC_001798.1 + 3233 0.69 0.418239
Target:  5'- cGCCCcagGGCGGCGagcACCcCCgcgGCGCCg -3'
miRNA:   3'- -CGGG---CCGUCGCgguUGGcGGa--CGCGG- -5'
5491 3' -63.6 NC_001798.1 + 3402 0.7 0.332341
Target:  5'- cCCCGGuCAGCGCCGcguucucGCgCGCCagcagggGCGCg -3'
miRNA:   3'- cGGGCC-GUCGCGGU-------UG-GCGGa------CGCGg -5'
5491 3' -63.6 NC_001798.1 + 3493 0.72 0.255446
Target:  5'- --gCGGCGGCucaugGCCAcggcgGCCGCCacgUGCGCCa -3'
miRNA:   3'- cggGCCGUCG-----CGGU-----UGGCGG---ACGCGG- -5'
5491 3' -63.6 NC_001798.1 + 3646 0.74 0.193304
Target:  5'- gGCCUGGUccAGCGCCAcguCC-CCggGCGCCa -3'
miRNA:   3'- -CGGGCCG--UCGCGGUu--GGcGGa-CGCGG- -5'
5491 3' -63.6 NC_001798.1 + 3711 0.67 0.512626
Target:  5'- cGUCCGGCguguacAGCaGCCGcgugaucagggcguACUG-CUGCGCCg -3'
miRNA:   3'- -CGGGCCG------UCG-CGGU--------------UGGCgGACGCGG- -5'
5491 3' -63.6 NC_001798.1 + 3762 0.71 0.319001
Target:  5'- cGCCCaGCucgGGCGCCcacacGGgCGCCgggGCGCCc -3'
miRNA:   3'- -CGGGcCG---UCGCGG-----UUgGCGGa--CGCGG- -5'
5491 3' -63.6 NC_001798.1 + 3810 0.72 0.255446
Target:  5'- aCCgGGCccGCGCCuccuCCGCCUcggGCGCCc -3'
miRNA:   3'- cGGgCCGu-CGCGGuu--GGCGGA---CGCGG- -5'
5491 3' -63.6 NC_001798.1 + 4003 0.73 0.235246
Target:  5'- cGCCCGGCcgugaagcggcccguGGCGUCGcggccggccACCGCC-GCGCg -3'
miRNA:   3'- -CGGGCCG---------------UCGCGGU---------UGGCGGaCGCGg -5'
5491 3' -63.6 NC_001798.1 + 4053 0.8 0.083747
Target:  5'- gGCCCGGCGGCGCUccaGGCgGCCcgcgGuCGCCg -3'
miRNA:   3'- -CGGGCCGUCGCGG---UUGgCGGa---C-GCGG- -5'
5491 3' -63.6 NC_001798.1 + 4108 0.69 0.409961
Target:  5'- gGCUCGGCccuGgGCgGGCUcgGCCgggGCGCCg -3'
miRNA:   3'- -CGGGCCGu--CgCGgUUGG--CGGa--CGCGG- -5'
5491 3' -63.6 NC_001798.1 + 4680 0.71 0.292243
Target:  5'- gGCCa-GCAGgGCCAGCUGCC-GCGgCg -3'
miRNA:   3'- -CGGgcCGUCgCGGUUGGCGGaCGCgG- -5'
5491 3' -63.6 NC_001798.1 + 4742 0.67 0.487895
Target:  5'- cCCCGGa--CGCCGggGCCGCCU-CGUCg -3'
miRNA:   3'- cGGGCCgucGCGGU--UGGCGGAcGCGG- -5'
5491 3' -63.6 NC_001798.1 + 4904 0.66 0.601069
Target:  5'- aUCCGGgGcCGCCggUCGUCUcCGCCg -3'
miRNA:   3'- cGGGCCgUcGCGGuuGGCGGAcGCGG- -5'
5491 3' -63.6 NC_001798.1 + 5121 0.71 0.305397
Target:  5'- cCCCGuGCGGUGCgugCGugUGCCUGUGUCu -3'
miRNA:   3'- cGGGC-CGUCGCG---GUugGCGGACGCGG- -5'
5491 3' -63.6 NC_001798.1 + 5399 0.7 0.347557
Target:  5'- gGCCCguuGGUcGCGCC-GCCGCCgcucCGCCc -3'
miRNA:   3'- -CGGG---CCGuCGCGGuUGGCGGac--GCGG- -5'
5491 3' -63.6 NC_001798.1 + 5448 0.73 0.22776
Target:  5'- cGCCCGGCgcgGGCGgCuuCCGCUUcCGCCc -3'
miRNA:   3'- -CGGGCCG---UCGCgGuuGGCGGAcGCGG- -5'
5491 3' -63.6 NC_001798.1 + 5737 0.67 0.524717
Target:  5'- uGCCCGGgGcccGCGUCAucCCGCgCUcCGCCc -3'
miRNA:   3'- -CGGGCCgU---CGCGGUu-GGCG-GAcGCGG- -5'
5491 3' -63.6 NC_001798.1 + 5917 0.66 0.55301
Target:  5'- gGCCCGGacggGGgGCgGGCCGuuCCUcGCGCa -3'
miRNA:   3'- -CGGGCCg---UCgCGgUUGGC--GGA-CGCGg -5'
5491 3' -63.6 NC_001798.1 + 5965 0.69 0.418239
Target:  5'- uCCCGGUcGcCGCCGcaccaggggacACCGgCUGCGCg -3'
miRNA:   3'- cGGGCCGuC-GCGGU-----------UGGCgGACGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.