miRNA display CGI


Results 1 - 20 of 458 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5491 3' -63.6 NC_001798.1 + 154506 0.66 0.55301
Target:  5'- cCCCcGC-GCGCCGcgggGCUGCCUucccgcggGCGCCc -3'
miRNA:   3'- cGGGcCGuCGCGGU----UGGCGGA--------CGCGG- -5'
5491 3' -63.6 NC_001798.1 + 154468 0.69 0.377894
Target:  5'- cCCCGGa---GCCGGCCGCUcccccgcggGCGCCg -3'
miRNA:   3'- cGGGCCgucgCGGUUGGCGGa--------CGCGG- -5'
5491 3' -63.6 NC_001798.1 + 154122 0.68 0.461096
Target:  5'- cCCCGGCGGCGggGACC-CCgGCGgCg -3'
miRNA:   3'- cGGGCCGUCGCggUUGGcGGaCGCgG- -5'
5491 3' -63.6 NC_001798.1 + 154078 0.73 0.22776
Target:  5'- gGCgCGGCacggcuggAGCGCCGgggcGCgGCCgGCGCCg -3'
miRNA:   3'- -CGgGCCG--------UCGCGGU----UGgCGGaCGCGG- -5'
5491 3' -63.6 NC_001798.1 + 153935 0.71 0.325972
Target:  5'- cGCCUGG-GGCaCCAGCaGCCaGCGCCg -3'
miRNA:   3'- -CGGGCCgUCGcGGUUGgCGGaCGCGG- -5'
5491 3' -63.6 NC_001798.1 + 153722 0.66 0.581742
Target:  5'- cGCCaGGUacuccgucguGGUGCgCAGCCGUa-GCGCCa -3'
miRNA:   3'- -CGGgCCG----------UCGCG-GUUGGCGgaCGCGG- -5'
5491 3' -63.6 NC_001798.1 + 153662 0.66 0.556818
Target:  5'- uCCCGcGCGGCGCguccgCGggcggggacgcggggGCCGCCgccgGCGCa -3'
miRNA:   3'- cGGGC-CGUCGCG-----GU---------------UGGCGGa---CGCGg -5'
5491 3' -63.6 NC_001798.1 + 153368 0.66 0.572124
Target:  5'- cGCCuCGGCcGcCGCCA--CGCg-GCGCCg -3'
miRNA:   3'- -CGG-GCCGuC-GCGGUugGCGgaCGCGG- -5'
5491 3' -63.6 NC_001798.1 + 153235 0.69 0.401787
Target:  5'- gGCCCgcGGCGGCGgaggacCCGcgcGCCGCC-GcCGCCg -3'
miRNA:   3'- -CGGG--CCGUCGC------GGU---UGGCGGaC-GCGG- -5'
5491 3' -63.6 NC_001798.1 + 153037 0.76 0.148385
Target:  5'- cGCgCGGCGGCGCgCGGuuGgCCgGCGCCg -3'
miRNA:   3'- -CGgGCCGUCGCG-GUUggC-GGaCGCGG- -5'
5491 3' -63.6 NC_001798.1 + 152745 0.71 0.298764
Target:  5'- aCCCGGCGGCGCgCGAggcuCUGCgUGUucuGCCa -3'
miRNA:   3'- cGGGCCGUCGCG-GUU----GGCGgACG---CGG- -5'
5491 3' -63.6 NC_001798.1 + 152635 0.66 0.601069
Target:  5'- aGUCCcccCGGCGCC--CCGCCgGCGCg -3'
miRNA:   3'- -CGGGcc-GUCGCGGuuGGCGGaCGCGg -5'
5491 3' -63.6 NC_001798.1 + 152231 0.67 0.534091
Target:  5'- uGCCgCGGCGGCcgcucgggGCCGggguCCGCCcgggagcucGUGCCg -3'
miRNA:   3'- -CGG-GCCGUCG--------CGGUu---GGCGGa--------CGCGG- -5'
5491 3' -63.6 NC_001798.1 + 151261 0.66 0.581742
Target:  5'- uCCaCGGCcGUGCCGGCCcGCacgGcCGCCu -3'
miRNA:   3'- cGG-GCCGuCGCGGUUGG-CGga-C-GCGG- -5'
5491 3' -63.6 NC_001798.1 + 150800 0.7 0.367076
Target:  5'- cGCCCGcaacGgGGCGCCGccGCUGCUgcugcuccgcgggGCGCCa -3'
miRNA:   3'- -CGGGC----CgUCGCGGU--UGGCGGa------------CGCGG- -5'
5491 3' -63.6 NC_001798.1 + 150675 0.7 0.34025
Target:  5'- cGCCgCGGCGucuuCGCCcacccGCgCGCCUGCGCg -3'
miRNA:   3'- -CGG-GCCGUc---GCGGu----UG-GCGGACGCGg -5'
5491 3' -63.6 NC_001798.1 + 150374 0.68 0.461096
Target:  5'- cGgCgGGCGGCGCgGGCCcgGCC-GCGUCc -3'
miRNA:   3'- -CgGgCCGUCGCGgUUGG--CGGaCGCGG- -5'
5491 3' -63.6 NC_001798.1 + 150254 0.69 0.378675
Target:  5'- cGCCCGGCccucccgacccgcgcGCGUCGGuCgCGCCUGC-CCg -3'
miRNA:   3'- -CGGGCCGu--------------CGCGGUU-G-GCGGACGcGG- -5'
5491 3' -63.6 NC_001798.1 + 150048 0.72 0.279536
Target:  5'- gGCCCGGCgcGGCGCCGcCCuCUUG-GCCc -3'
miRNA:   3'- -CGGGCCG--UCGCGGUuGGcGGACgCGG- -5'
5491 3' -63.6 NC_001798.1 + 149241 0.7 0.370145
Target:  5'- gGCCCgcgggGGCGuCGCCGGCCGgCgcgggcGCGCCc -3'
miRNA:   3'- -CGGG-----CCGUcGCGGUUGGCgGa-----CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.