miRNA display CGI


Results 41 - 60 of 458 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5491 3' -63.6 NC_001798.1 + 153722 0.66 0.581742
Target:  5'- cGCCaGGUacuccgucguGGUGCgCAGCCGUa-GCGCCa -3'
miRNA:   3'- -CGGgCCG----------UCGCG-GUUGGCGgaCGCGG- -5'
5491 3' -63.6 NC_001798.1 + 21743 0.66 0.581742
Target:  5'- gGUgCGGCGGCGaCCGGgaCGCCggcccuuuaugUGCGCg -3'
miRNA:   3'- -CGgGCCGUCGC-GGUUg-GCGG-----------ACGCGg -5'
5491 3' -63.6 NC_001798.1 + 34311 0.66 0.581742
Target:  5'- gGCUCgcgGGCGGUgcgGCUGACCuGCCUGC-CCu -3'
miRNA:   3'- -CGGG---CCGUCG---CGGUUGG-CGGACGcGG- -5'
5491 3' -63.6 NC_001798.1 + 77974 0.66 0.581742
Target:  5'- cGCCuCGGCuggAGCGCgGcguuccacgccGCCGCCgaaaccuaCGCCg -3'
miRNA:   3'- -CGG-GCCG---UCGCGgU-----------UGGCGGac------GCGG- -5'
5491 3' -63.6 NC_001798.1 + 112528 0.66 0.581742
Target:  5'- aCCCGuggguuGCucucGCGCguGCCGCCcGCGCg -3'
miRNA:   3'- cGGGC------CGu---CGCGguUGGCGGaCGCGg -5'
5491 3' -63.6 NC_001798.1 + 117359 0.66 0.581742
Target:  5'- aCCUGGguGUggGCUAcACCGCCgucGCgGCCa -3'
miRNA:   3'- cGGGCCguCG--CGGU-UGGCGGa--CG-CGG- -5'
5491 3' -63.6 NC_001798.1 + 139851 0.66 0.581742
Target:  5'- cCCUGGcCAGCaGCC--CCGCCU-CGCUg -3'
miRNA:   3'- cGGGCC-GUCG-CGGuuGGCGGAcGCGG- -5'
5491 3' -63.6 NC_001798.1 + 68817 0.66 0.580779
Target:  5'- uGCagaCGGCGGUgacgcuaGCCAGCuCGuCCUGUGUg -3'
miRNA:   3'- -CGg--GCCGUCG-------CGGUUG-GC-GGACGCGg -5'
5491 3' -63.6 NC_001798.1 + 57240 0.66 0.580779
Target:  5'- gGCCCccgGGCGGgGCCGACaCGuuuaccaucaccuCCUcuaagcuagGCGCCg -3'
miRNA:   3'- -CGGG---CCGUCgCGGUUG-GC-------------GGA---------CGCGG- -5'
5491 3' -63.6 NC_001798.1 + 133137 0.66 0.578853
Target:  5'- cGCCCauaGCAGCGCCAucuuCCGgCgGCuuuacgaccacuacGCCa -3'
miRNA:   3'- -CGGGc--CGUCGCGGUu---GGCgGaCG--------------CGG- -5'
5491 3' -63.6 NC_001798.1 + 85172 0.66 0.578853
Target:  5'- uCCUGGCGGCcugucacgugguagGCguGCCGCCcgcgaGCGCg -3'
miRNA:   3'- cGGGCCGUCG--------------CGguUGGCGGa----CGCGg -5'
5491 3' -63.6 NC_001798.1 + 70013 0.66 0.572124
Target:  5'- aGCCCcuccguauagGGCGGCGgCAGucauucCCGUUUGgGCCc -3'
miRNA:   3'- -CGGG----------CCGUCGCgGUU------GGCGGACgCGG- -5'
5491 3' -63.6 NC_001798.1 + 87718 0.66 0.572124
Target:  5'- cUCCGccGUAGCGCCGGCCcccGCCgGC-CCg -3'
miRNA:   3'- cGGGC--CGUCGCGGUUGG---CGGaCGcGG- -5'
5491 3' -63.6 NC_001798.1 + 111888 0.66 0.572124
Target:  5'- aGCUCGGgAGCcggggGagGugCGCCUGgGCCa -3'
miRNA:   3'- -CGGGCCgUCG-----CggUugGCGGACgCGG- -5'
5491 3' -63.6 NC_001798.1 + 145707 0.66 0.572124
Target:  5'- aCUCGGCGGaccaGCgAGCCccggccccgGCCcGCGCCc -3'
miRNA:   3'- cGGGCCGUCg---CGgUUGG---------CGGaCGCGG- -5'
5491 3' -63.6 NC_001798.1 + 48155 0.66 0.572124
Target:  5'- cGCCgCGGUcgGGCGCCuGGCgGCCacgcaCGCCc -3'
miRNA:   3'- -CGG-GCCG--UCGCGG-UUGgCGGac---GCGG- -5'
5491 3' -63.6 NC_001798.1 + 143023 0.66 0.572124
Target:  5'- cGCCC-GCAGCuGCUcGCgCaCCUGCGCg -3'
miRNA:   3'- -CGGGcCGUCG-CGGuUG-GcGGACGCGg -5'
5491 3' -63.6 NC_001798.1 + 42751 0.66 0.572124
Target:  5'- cGCCCgcacagacgGGCGGCGCgCGggGCCGacagGCGCUu -3'
miRNA:   3'- -CGGG---------CCGUCGCG-GU--UGGCgga-CGCGG- -5'
5491 3' -63.6 NC_001798.1 + 107637 0.66 0.572124
Target:  5'- cGCCCGucgGGUGUCGAgaCGCCcuguUGCGCCu -3'
miRNA:   3'- -CGGGCcg-UCGCGGUUg-GCGG----ACGCGG- -5'
5491 3' -63.6 NC_001798.1 + 153368 0.66 0.572124
Target:  5'- cGCCuCGGCcGcCGCCA--CGCg-GCGCCg -3'
miRNA:   3'- -CGG-GCCGuC-GCGGUugGCGgaCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.