miRNA display CGI


Results 21 - 40 of 458 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5491 3' -63.6 NC_001798.1 + 98790 0.66 0.591392
Target:  5'- -gCCGGCcaCGCCAGCUGCgC-GCGCa -3'
miRNA:   3'- cgGGCCGucGCGGUUGGCG-GaCGCGg -5'
5491 3' -63.6 NC_001798.1 + 140013 0.66 0.591392
Target:  5'- gGCUgGGCcagGGUGCCcucACgCGCCUG-GCCu -3'
miRNA:   3'- -CGGgCCG---UCGCGGu--UG-GCGGACgCGG- -5'
5491 3' -63.6 NC_001798.1 + 141578 0.66 0.591392
Target:  5'- aGCUgCGGCGGCGgCAcgcgACgGCCgGCGUg -3'
miRNA:   3'- -CGG-GCCGUCGCgGU----UGgCGGaCGCGg -5'
5491 3' -63.6 NC_001798.1 + 23000 0.66 0.591392
Target:  5'- uGCCgCGGaCGGCGUCGucUCGCCgcgGCaGCUg -3'
miRNA:   3'- -CGG-GCC-GUCGCGGUu-GGCGGa--CG-CGG- -5'
5491 3' -63.6 NC_001798.1 + 24051 0.66 0.591392
Target:  5'- cGCCCGGggacgUGGCGCUgGACCagGCCUGCuuCCg -3'
miRNA:   3'- -CGGGCC-----GUCGCGG-UUGG--CGGACGc-GG- -5'
5491 3' -63.6 NC_001798.1 + 40788 0.66 0.591392
Target:  5'- cGCCC-GCAGaCGcCCGACCacCCUuuggaGCGCCc -3'
miRNA:   3'- -CGGGcCGUC-GC-GGUUGGc-GGA-----CGCGG- -5'
5491 3' -63.6 NC_001798.1 + 66050 0.66 0.591392
Target:  5'- cGCCCGGCA-CGCCAGaaacCCGgCgaUGCGg- -3'
miRNA:   3'- -CGGGCCGUcGCGGUU----GGCgG--ACGCgg -5'
5491 3' -63.6 NC_001798.1 + 72444 0.66 0.591392
Target:  5'- -gCCGGUucgagAGCGaCGggcACCGCCUGUacGCCg -3'
miRNA:   3'- cgGGCCG-----UCGCgGU---UGGCGGACG--CGG- -5'
5491 3' -63.6 NC_001798.1 + 77174 0.66 0.591392
Target:  5'- -gCCGGgAGCGCCG-CCGUC-GCGaCg -3'
miRNA:   3'- cgGGCCgUCGCGGUuGGCGGaCGCgG- -5'
5491 3' -63.6 NC_001798.1 + 87464 0.66 0.591392
Target:  5'- cCCCGGCA-CGUCGGCCcaCCUGCaCUa -3'
miRNA:   3'- cGGGCCGUcGCGGUUGGc-GGACGcGG- -5'
5491 3' -63.6 NC_001798.1 + 131545 0.66 0.591392
Target:  5'- uCCCGGacgcgAGCGCCccGACgGCCcgGUGCg -3'
miRNA:   3'- cGGGCCg----UCGCGG--UUGgCGGa-CGCGg -5'
5491 3' -63.6 NC_001798.1 + 109564 0.66 0.590426
Target:  5'- gGCgCGGUggccccgAGCGCgGcCCGCCUGaucgaCGCCc -3'
miRNA:   3'- -CGgGCCG-------UCGCGgUuGGCGGAC-----GCGG- -5'
5491 3' -63.6 NC_001798.1 + 35745 0.66 0.588494
Target:  5'- cGCCCGGCcGCccacuccccgcucgGCCucuCCGgCUGCGgUg -3'
miRNA:   3'- -CGGGCCGuCG--------------CGGuu-GGCgGACGCgG- -5'
5491 3' -63.6 NC_001798.1 + 66768 0.66 0.585598
Target:  5'- gGUgCGGCGGCGUgGGCCgcggaaucggagucgGCCgacGCGCg -3'
miRNA:   3'- -CGgGCCGUCGCGgUUGG---------------CGGa--CGCGg -5'
5491 3' -63.6 NC_001798.1 + 117359 0.66 0.581742
Target:  5'- aCCUGGguGUggGCUAcACCGCCgucGCgGCCa -3'
miRNA:   3'- cGGGCCguCG--CGGU-UGGCGGa--CG-CGG- -5'
5491 3' -63.6 NC_001798.1 + 112528 0.66 0.581742
Target:  5'- aCCCGuggguuGCucucGCGCguGCCGCCcGCGCg -3'
miRNA:   3'- cGGGC------CGu---CGCGguUGGCGGaCGCGg -5'
5491 3' -63.6 NC_001798.1 + 77974 0.66 0.581742
Target:  5'- cGCCuCGGCuggAGCGCgGcguuccacgccGCCGCCgaaaccuaCGCCg -3'
miRNA:   3'- -CGG-GCCG---UCGCGgU-----------UGGCGGac------GCGG- -5'
5491 3' -63.6 NC_001798.1 + 34311 0.66 0.581742
Target:  5'- gGCUCgcgGGCGGUgcgGCUGACCuGCCUGC-CCu -3'
miRNA:   3'- -CGGG---CCGUCG---CGGUUGG-CGGACGcGG- -5'
5491 3' -63.6 NC_001798.1 + 21743 0.66 0.581742
Target:  5'- gGUgCGGCGGCGaCCGGgaCGCCggcccuuuaugUGCGCg -3'
miRNA:   3'- -CGgGCCGUCGC-GGUUg-GCGG-----------ACGCGg -5'
5491 3' -63.6 NC_001798.1 + 153722 0.66 0.581742
Target:  5'- cGCCaGGUacuccgucguGGUGCgCAGCCGUa-GCGCCa -3'
miRNA:   3'- -CGGgCCG----------UCGCG-GUUGGCGgaCGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.