Results 21 - 40 of 142 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5492 | 3' | -63.2 | NC_001798.1 | + | 132148 | 0.72 | 0.282246 |
Target: 5'- cCGGGGGCCggcggGCGGggcgCCCCC-CCCGg- -3' miRNA: 3'- -GUCCCCGG-----UGCCaa--GGGGGuGGGUgc -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 10702 | 0.72 | 0.276019 |
Target: 5'- gCAGGGGaCCGCaggcauccaggGGUUCCgCgGCCCACa -3' miRNA: 3'- -GUCCCC-GGUG-----------CCAAGGgGgUGGGUGc -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 7327 | 0.71 | 0.315049 |
Target: 5'- cCAGGGaGCCcCgGGUUCCCCgagaGCCCAgGg -3' miRNA: 3'- -GUCCC-CGGuG-CCAAGGGGg---UGGGUgC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 47861 | 0.71 | 0.320557 |
Target: 5'- cCGGGGGCCccgugggcgccgGCGGgcgcucgcacgCCCCUcCCCGCGg -3' miRNA: 3'- -GUCCCCGG------------UGCCaa---------GGGGGuGGGUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 2541 | 0.71 | 0.336075 |
Target: 5'- gCGGGGGgCGCGG--CCCCCGCgggaggggcggCCGCGg -3' miRNA: 3'- -GUCCCCgGUGCCaaGGGGGUG-----------GGUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 152712 | 0.71 | 0.321946 |
Target: 5'- cCAGGGGaCCAauaGGggCCgaucagCCCACCCACc -3' miRNA: 3'- -GUCCCC-GGUg--CCaaGG------GGGUGGGUGc -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 101496 | 0.71 | 0.307592 |
Target: 5'- uGGGGGCCAuCGGUUcggcuccuagcccCCCCCcCUCACc -3' miRNA: 3'- gUCCCCGGU-GCCAA-------------GGGGGuGGGUGc -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 146590 | 0.71 | 0.350652 |
Target: 5'- gCAGacGGGCCGCGGcgCCagCgGCCCACGc -3' miRNA: 3'- -GUC--CCCGGUGCCaaGGg-GgUGGGUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 149474 | 0.71 | 0.333927 |
Target: 5'- gCGGGGGCCGCGGcccgcagcaggUCCgCCACguuccccgucugguCCACGa -3' miRNA: 3'- -GUCCCCGGUGCCa----------AGGgGGUG--------------GGUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 152048 | 0.71 | 0.308265 |
Target: 5'- uCGGGGGgcggcgcacggcCCACGGgggUCCCCCGaCCGCu -3' miRNA: 3'- -GUCCCC------------GGUGCCa--AGGGGGUgGGUGc -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 4146 | 0.71 | 0.321946 |
Target: 5'- -cGGGGCCcucGCGGgcaCCCCCGCCUccuCGu -3' miRNA: 3'- guCCCCGG---UGCCaa-GGGGGUGGGu--GC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 10673 | 0.7 | 0.365673 |
Target: 5'- gGGGGGCCACaG---CgCCACCCACGa -3' miRNA: 3'- gUCCCCGGUGcCaagGgGGUGGGUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 147062 | 0.7 | 0.389022 |
Target: 5'- gAGGGGCCcccgcaccucgGCGGccgCCCCCuCCgGCGc -3' miRNA: 3'- gUCCCCGG-----------UGCCaa-GGGGGuGGgUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 33183 | 0.7 | 0.39702 |
Target: 5'- gGGGGGCgggCACGaGaagccgCCCCCACCCcCGa -3' miRNA: 3'- gUCCCCG---GUGC-Caa----GGGGGUGGGuGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 136831 | 0.7 | 0.358107 |
Target: 5'- uGGcGGGCCACGa--CCCCCAaCCACGc -3' miRNA: 3'- gUC-CCCGGUGCcaaGGGGGUgGGUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 24717 | 0.7 | 0.39702 |
Target: 5'- -cGGGGcCCGCGGgcgcggcCgCCCCGCCgCACGc -3' miRNA: 3'- guCCCC-GGUGCCaa-----G-GGGGUGG-GUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 92436 | 0.7 | 0.39702 |
Target: 5'- gGGGGGaCCGCGGUgUCCCUCaagcuuauGCCCuCGc -3' miRNA: 3'- gUCCCC-GGUGCCA-AGGGGG--------UGGGuGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 3891 | 0.7 | 0.365673 |
Target: 5'- cCGGGGGCgGgGGgccggCCCCgGgCCACGg -3' miRNA: 3'- -GUCCCCGgUgCCaa---GGGGgUgGGUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 57573 | 0.7 | 0.373348 |
Target: 5'- aGGGGGCgGCauugcucgcGUUCCCCCgcggGCCCACc -3' miRNA: 3'- gUCCCCGgUGc--------CAAGGGGG----UGGGUGc -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 127128 | 0.7 | 0.365673 |
Target: 5'- cCGGGGGUUugGGaugCCCgCCGCCCugaccACGg -3' miRNA: 3'- -GUCCCCGGugCCaa-GGG-GGUGGG-----UGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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