miRNA display CGI


Results 21 - 40 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5492 3' -63.2 NC_001798.1 + 127885 0.72 0.300931
Target:  5'- cCGGGGGCCcCgGGUUCCCauuggccccagagCCcCCCACGu -3'
miRNA:   3'- -GUCCCCGGuG-CCAAGGG-------------GGuGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 129359 0.72 0.301592
Target:  5'- --cGGGCCugGCGGggCCCCCggACCCGCc -3'
miRNA:   3'- gucCCCGG--UGCCaaGGGGG--UGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 101496 0.71 0.307592
Target:  5'- uGGGGGCCAuCGGUUcggcuccuagcccCCCCCcCUCACc -3'
miRNA:   3'- gUCCCCGGU-GCCAA-------------GGGGGuGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 152048 0.71 0.308265
Target:  5'- uCGGGGGgcggcgcacggcCCACGGgggUCCCCCGaCCGCu -3'
miRNA:   3'- -GUCCCC------------GGUGCCa--AGGGGGUgGGUGc -5'
5492 3' -63.2 NC_001798.1 + 7327 0.71 0.315049
Target:  5'- cCAGGGaGCCcCgGGUUCCCCgagaGCCCAgGg -3'
miRNA:   3'- -GUCCC-CGGuG-CCAAGGGGg---UGGGUgC- -5'
5492 3' -63.2 NC_001798.1 + 47861 0.71 0.320557
Target:  5'- cCGGGGGCCccgugggcgccgGCGGgcgcucgcacgCCCCUcCCCGCGg -3'
miRNA:   3'- -GUCCCCGG------------UGCCaa---------GGGGGuGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 4146 0.71 0.321946
Target:  5'- -cGGGGCCcucGCGGgcaCCCCCGCCUccuCGu -3'
miRNA:   3'- guCCCCGG---UGCCaa-GGGGGUGGGu--GC- -5'
5492 3' -63.2 NC_001798.1 + 152712 0.71 0.321946
Target:  5'- cCAGGGGaCCAauaGGggCCgaucagCCCACCCACc -3'
miRNA:   3'- -GUCCCC-GGUg--CCaaGG------GGGUGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 149474 0.71 0.333927
Target:  5'- gCGGGGGCCGCGGcccgcagcaggUCCgCCACguuccccgucugguCCACGa -3'
miRNA:   3'- -GUCCCCGGUGCCa----------AGGgGGUG--------------GGUGC- -5'
5492 3' -63.2 NC_001798.1 + 2541 0.71 0.336075
Target:  5'- gCGGGGGgCGCGG--CCCCCGCgggaggggcggCCGCGg -3'
miRNA:   3'- -GUCCCCgGUGCCaaGGGGGUG-----------GGUGC- -5'
5492 3' -63.2 NC_001798.1 + 146590 0.71 0.350652
Target:  5'- gCAGacGGGCCGCGGcgCCagCgGCCCACGc -3'
miRNA:   3'- -GUC--CCCGGUGCCaaGGg-GgUGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 136831 0.7 0.358107
Target:  5'- uGGcGGGCCACGa--CCCCCAaCCACGc -3'
miRNA:   3'- gUC-CCCGGUGCcaaGGGGGUgGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 10673 0.7 0.365673
Target:  5'- gGGGGGCCACaG---CgCCACCCACGa -3'
miRNA:   3'- gUCCCCGGUGcCaagGgGGUGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 127128 0.7 0.365673
Target:  5'- cCGGGGGUUugGGaugCCCgCCGCCCugaccACGg -3'
miRNA:   3'- -GUCCCCGGugCCaa-GGG-GGUGGG-----UGC- -5'
5492 3' -63.2 NC_001798.1 + 3891 0.7 0.365673
Target:  5'- cCGGGGGCgGgGGgccggCCCCgGgCCACGg -3'
miRNA:   3'- -GUCCCCGgUgCCaa---GGGGgUgGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 153839 0.7 0.365673
Target:  5'- -cGGGGCCucCGGcgccuucCCCCCGCCCuCGc -3'
miRNA:   3'- guCCCCGGu-GCCaa-----GGGGGUGGGuGC- -5'
5492 3' -63.2 NC_001798.1 + 57573 0.7 0.373348
Target:  5'- aGGGGGCgGCauugcucgcGUUCCCCCgcggGCCCACc -3'
miRNA:   3'- gUCCCCGgUGc--------CAAGGGGG----UGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 107429 0.7 0.381131
Target:  5'- aCGGGGgucGCCGCGGcgaCCCCgCGCCC-CGa -3'
miRNA:   3'- -GUCCC---CGGUGCCaa-GGGG-GUGGGuGC- -5'
5492 3' -63.2 NC_001798.1 + 74583 0.7 0.381131
Target:  5'- --cGGGCC-CGGUcguccccgcgcUCCCCgCGCCCACc -3'
miRNA:   3'- gucCCCGGuGCCA-----------AGGGG-GUGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 147062 0.7 0.389022
Target:  5'- gAGGGGCCcccgcaccucgGCGGccgCCCCCuCCgGCGc -3'
miRNA:   3'- gUCCCCGG-----------UGCCaa-GGGGGuGGgUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.