miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5492 3' -63.2 NC_001798.1 + 51965 0.81 0.07665
Target:  5'- gAGGGGCCGCGcc-CCCCCACCC-CGg -3'
miRNA:   3'- gUCCCCGGUGCcaaGGGGGUGGGuGC- -5'
5492 3' -63.2 NC_001798.1 + 121696 0.8 0.086979
Target:  5'- uGGGGGCCGCGGcUCCCgCCGCCgCgACGg -3'
miRNA:   3'- gUCCCCGGUGCCaAGGG-GGUGG-G-UGC- -5'
5492 3' -63.2 NC_001798.1 + 25165 0.79 0.098624
Target:  5'- gCGGGGGCCGCGc--CCCCCGCCC-CGc -3'
miRNA:   3'- -GUCCCCGGUGCcaaGGGGGUGGGuGC- -5'
5492 3' -63.2 NC_001798.1 + 147236 0.77 0.132829
Target:  5'- gCGGGGGCCcCGGggCCCCgGgCCGCGc -3'
miRNA:   3'- -GUCCCCGGuGCCaaGGGGgUgGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 85293 0.76 0.150089
Target:  5'- gCGGGGGCCGgGGUccgCCcgcggCCCGCCCGCa -3'
miRNA:   3'- -GUCCCCGGUgCCAa--GG-----GGGUGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 16241 0.75 0.173476
Target:  5'- -uGGGGCCGgGGcccUCCCCGCCCACc -3'
miRNA:   3'- guCCCCGGUgCCaa-GGGGGUGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 58930 0.75 0.173476
Target:  5'- --aGGGCCACGGccgcUCCCCCGCCgACc -3'
miRNA:   3'- gucCCCGGUGCCa---AGGGGGUGGgUGc -5'
5492 3' -63.2 NC_001798.1 + 96995 0.75 0.177676
Target:  5'- -cGGGGCCAgGGccggCCCgCCGCCCGCc -3'
miRNA:   3'- guCCCCGGUgCCaa--GGG-GGUGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 27608 0.75 0.195393
Target:  5'- aGGGGGCgCGCGGggcugcccugCCgCCCGCCCGCc -3'
miRNA:   3'- gUCCCCG-GUGCCaa--------GG-GGGUGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 34808 0.74 0.209678
Target:  5'- -cGGGGCCcCGGggCCCCCGCgcuCCGCc -3'
miRNA:   3'- guCCCCGGuGCCaaGGGGGUG---GGUGc -5'
5492 3' -63.2 NC_001798.1 + 448 0.74 0.209678
Target:  5'- -cGGGGCUGCGGUcccgcggccgccUCCCCCGcggccgccuccCCCGCGc -3'
miRNA:   3'- guCCCCGGUGCCA------------AGGGGGU-----------GGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 62826 0.74 0.224853
Target:  5'- -uGGGcCCACGcg-CCCCCGCCCGCGu -3'
miRNA:   3'- guCCCcGGUGCcaaGGGGGUGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 124512 0.74 0.224853
Target:  5'- gGGGGGCUGCGGgcgugucgUCCCaCACUCGCGu -3'
miRNA:   3'- gUCCCCGGUGCCa-------AGGGgGUGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 48382 0.74 0.226946
Target:  5'- -cGGGGCgugccgccgcgaccgCACGGg-CCCCCGCCCGCu -3'
miRNA:   3'- guCCCCG---------------GUGCCaaGGGGGUGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 27030 0.73 0.240951
Target:  5'- gCGGGGGUCggGCGGgcggcacgucUCCCgCGCCCGCGg -3'
miRNA:   3'- -GUCCCCGG--UGCCa---------AGGGgGUGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 92034 0.73 0.244843
Target:  5'- cCAGGGGCCGCucggcgaacgggcgGGUguagaCCCCACCCccaGCGc -3'
miRNA:   3'- -GUCCCCGGUG--------------CCAag---GGGGUGGG---UGC- -5'
5492 3' -63.2 NC_001798.1 + 145390 0.73 0.246527
Target:  5'- gAGGGGCgaCGCGGggaaagcgcgCCCCCGCCCGg- -3'
miRNA:   3'- gUCCCCG--GUGCCaa--------GGGGGUGGGUgc -5'
5492 3' -63.2 NC_001798.1 + 10702 0.72 0.276019
Target:  5'- gCAGGGGaCCGCaggcauccaggGGUUCCgCgGCCCACa -3'
miRNA:   3'- -GUCCCC-GGUG-----------CCAAGGgGgUGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 71409 0.72 0.276019
Target:  5'- gCGGGGGUgcccgCGCGGacgcCCCCCGgCCACGg -3'
miRNA:   3'- -GUCCCCG-----GUGCCaa--GGGGGUgGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 132148 0.72 0.282246
Target:  5'- cCGGGGGCCggcggGCGGggcgCCCCC-CCCGg- -3'
miRNA:   3'- -GUCCCCGG-----UGCCaa--GGGGGuGGGUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.