miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5492 3' -63.2 NC_001798.1 + 181 0.68 0.482453
Target:  5'- -cGGGGCUgccuucccGCGGgcgCCCCCGcgcggcuuuuuuCCCGCGc -3'
miRNA:   3'- guCCCCGG--------UGCCaa-GGGGGU------------GGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 448 0.74 0.209678
Target:  5'- -cGGGGCUGCGGUcccgcggccgccUCCCCCGcggccgccuccCCCGCGc -3'
miRNA:   3'- guCCCCGGUGCCA------------AGGGGGU-----------GGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 503 0.69 0.405123
Target:  5'- cCGGGGGCUuccccCGccccUCCCCCcgcGCCCGCGg -3'
miRNA:   3'- -GUCCCCGGu----GCca--AGGGGG---UGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 1484 0.67 0.547198
Target:  5'- -cGGGcGCCAUGGcgUCgCCCgCGCCCgagGCGg -3'
miRNA:   3'- guCCC-CGGUGCCa-AG-GGG-GUGGG---UGC- -5'
5492 3' -63.2 NC_001798.1 + 1987 0.69 0.405123
Target:  5'- uCGGGGG-CGCGGUccagUUgCCCGCCCAgGc -3'
miRNA:   3'- -GUCCCCgGUGCCA----AGgGGGUGGGUgC- -5'
5492 3' -63.2 NC_001798.1 + 2099 0.69 0.421636
Target:  5'- gGGGGGCC-CG---CCCCCggcgcgGCCCGCGg -3'
miRNA:   3'- gUCCCCGGuGCcaaGGGGG------UGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 2541 0.71 0.336075
Target:  5'- gCGGGGGgCGCGG--CCCCCGCgggaggggcggCCGCGg -3'
miRNA:   3'- -GUCCCCgGUGCCaaGGGGGUG-----------GGUGC- -5'
5492 3' -63.2 NC_001798.1 + 2605 0.68 0.482453
Target:  5'- uCGGGGGgCGCGGggcgCCgCCCggcggcGCCCugGc -3'
miRNA:   3'- -GUCCCCgGUGCCaa--GG-GGG------UGGGugC- -5'
5492 3' -63.2 NC_001798.1 + 2854 0.66 0.585431
Target:  5'- -cGGcGGCCACGGcggCCUCgCugCCGCc -3'
miRNA:   3'- guCC-CCGGUGCCaa-GGGG-GugGGUGc -5'
5492 3' -63.2 NC_001798.1 + 3891 0.7 0.365673
Target:  5'- cCGGGGGCgGgGGgccggCCCCgGgCCACGg -3'
miRNA:   3'- -GUCCCCGgUgCCaa---GGGGgUgGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 4146 0.71 0.321946
Target:  5'- -cGGGGCCcucGCGGgcaCCCCCGCCUccuCGu -3'
miRNA:   3'- guCCCCGG---UGCCaa-GGGGGUGGGu--GC- -5'
5492 3' -63.2 NC_001798.1 + 4907 0.68 0.473498
Target:  5'- -cGGGGCCGcCGGUcgUCUCCGCC-GCGg -3'
miRNA:   3'- guCCCCGGU-GCCAa-GGGGGUGGgUGC- -5'
5492 3' -63.2 NC_001798.1 + 5586 0.67 0.547198
Target:  5'- aAGGGGCCgGCGaGgUCgCCCCGuuggUCCGCGg -3'
miRNA:   3'- gUCCCCGG-UGC-CaAG-GGGGU----GGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 7327 0.71 0.315049
Target:  5'- cCAGGGaGCCcCgGGUUCCCCgagaGCCCAgGg -3'
miRNA:   3'- -GUCCC-CGGuG-CCAAGGGGg---UGGGUgC- -5'
5492 3' -63.2 NC_001798.1 + 7408 0.66 0.595079
Target:  5'- cCAGGGacCCGCGa--CCCCCAcgaccCCCACGg -3'
miRNA:   3'- -GUCCCc-GGUGCcaaGGGGGU-----GGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 7444 0.67 0.519049
Target:  5'- cCAGGGaGCCuagacccccACGGgaaCCCCgcgcaACCCGCGg -3'
miRNA:   3'- -GUCCC-CGG---------UGCCaagGGGG-----UGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 10673 0.7 0.365673
Target:  5'- gGGGGGCCACaG---CgCCACCCACGa -3'
miRNA:   3'- gUCCCCGGUGcCaagGgGGUGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 10702 0.72 0.276019
Target:  5'- gCAGGGGaCCGCaggcauccaggGGUUCCgCgGCCCACa -3'
miRNA:   3'- -GUCCCC-GGUG-----------CCAAGGgGgUGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 12206 0.68 0.482453
Target:  5'- -uGGGGCCccACGG--CCCCggCAUCCACGa -3'
miRNA:   3'- guCCCCGG--UGCCaaGGGG--GUGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 12903 0.69 0.447149
Target:  5'- aCGGGGGCUugGGg-CCgugCCACCCgGCGa -3'
miRNA:   3'- -GUCCCCGGugCCaaGGg--GGUGGG-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.