miRNA display CGI


Results 21 - 40 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5492 3' -63.2 NC_001798.1 + 150172 0.66 0.575813
Target:  5'- gGGcGGGCCGCcg--CCCCC-UCCGCGg -3'
miRNA:   3'- gUC-CCCGGUGccaaGGGGGuGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 84508 0.66 0.575813
Target:  5'- cCGGGcGGCCGCcguagGGcUUCCCCAucCCCGCc -3'
miRNA:   3'- -GUCC-CCGGUG-----CCaAGGGGGU--GGGUGc -5'
5492 3' -63.2 NC_001798.1 + 31873 0.67 0.566232
Target:  5'- aGGGGGCgGCGG----CCCGCCCcCGg -3'
miRNA:   3'- gUCCCCGgUGCCaaggGGGUGGGuGC- -5'
5492 3' -63.2 NC_001798.1 + 24460 0.67 0.566232
Target:  5'- -cGGcGCCGCGGgggugCUCgCCGCCCugGg -3'
miRNA:   3'- guCCcCGGUGCCaa---GGG-GGUGGGugC- -5'
5492 3' -63.2 NC_001798.1 + 34109 0.67 0.566232
Target:  5'- uGGGGGCggugggcgUACGGg--CCCgACCCGCGc -3'
miRNA:   3'- gUCCCCG--------GUGCCaagGGGgUGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 22360 0.67 0.566232
Target:  5'- -cGGGGCCgcgcauaauGCGGUUCCaCCUgggggcggaACCC-CGg -3'
miRNA:   3'- guCCCCGG---------UGCCAAGG-GGG---------UGGGuGC- -5'
5492 3' -63.2 NC_001798.1 + 23577 0.67 0.566232
Target:  5'- cCGGGGGCgGCGccccggCCgagCCCGCCCAgGg -3'
miRNA:   3'- -GUCCCCGgUGCcaa---GG---GGGUGGGUgC- -5'
5492 3' -63.2 NC_001798.1 + 122835 0.67 0.559549
Target:  5'- uCGGGGGCgGCGGcggcggcucgucccUCucagcgacgacauCCCCGCCCGCu -3'
miRNA:   3'- -GUCCCCGgUGCCa-------------AG-------------GGGGUGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 140016 0.67 0.556692
Target:  5'- --uGGGCCAgGGUgCCCUCACgCGCc -3'
miRNA:   3'- gucCCCGGUgCCAaGGGGGUGgGUGc -5'
5492 3' -63.2 NC_001798.1 + 40825 0.67 0.556692
Target:  5'- uGGGGGCCGCuGGUUCCgCguUUUugGg -3'
miRNA:   3'- gUCCCCGGUG-CCAAGGgGguGGGugC- -5'
5492 3' -63.2 NC_001798.1 + 59831 0.67 0.547198
Target:  5'- uGGGGcGCCGCGGUcgCCCgCGuCCgGCu -3'
miRNA:   3'- gUCCC-CGGUGCCAa-GGGgGU-GGgUGc -5'
5492 3' -63.2 NC_001798.1 + 1484 0.67 0.547198
Target:  5'- -cGGGcGCCAUGGcgUCgCCCgCGCCCgagGCGg -3'
miRNA:   3'- guCCC-CGGUGCCa-AG-GGG-GUGGG---UGC- -5'
5492 3' -63.2 NC_001798.1 + 30181 0.67 0.547198
Target:  5'- aCGGGGGaCACGGcgCgggggUCCCGCCuCACGc -3'
miRNA:   3'- -GUCCCCgGUGCCaaG-----GGGGUGG-GUGC- -5'
5492 3' -63.2 NC_001798.1 + 5586 0.67 0.547198
Target:  5'- aAGGGGCCgGCGaGgUCgCCCCGuuggUCCGCGg -3'
miRNA:   3'- gUCCCCGG-UGC-CaAG-GGGGU----GGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 69848 0.67 0.537757
Target:  5'- --cGGGCCGCcgucGGccgCCCCCcCCCACa -3'
miRNA:   3'- gucCCCGGUG----CCaa-GGGGGuGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 32573 0.67 0.537757
Target:  5'- --cGGGCCGCGG--CCCCCGCguggagccgCCGCa -3'
miRNA:   3'- gucCCCGGUGCCaaGGGGGUG---------GGUGc -5'
5492 3' -63.2 NC_001798.1 + 153684 0.67 0.537757
Target:  5'- -cGGGGaCGCGGgggCCgCCGCCgGCGc -3'
miRNA:   3'- guCCCCgGUGCCaa-GGgGGUGGgUGC- -5'
5492 3' -63.2 NC_001798.1 + 105197 0.67 0.537757
Target:  5'- -cGGGGcCCGCGGUgggcgacggcgcUgCCCCGUCCGCa -3'
miRNA:   3'- guCCCC-GGUGCCA------------AgGGGGUGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 91777 0.67 0.537757
Target:  5'- aGGGcGGCCACGc--CCCCUGCCgAUGa -3'
miRNA:   3'- gUCC-CCGGUGCcaaGGGGGUGGgUGC- -5'
5492 3' -63.2 NC_001798.1 + 98492 0.67 0.537757
Target:  5'- cUAGcGGGCgGCGGgagcgacgcgCCCCCguagGCCCGCc -3'
miRNA:   3'- -GUC-CCCGgUGCCaa--------GGGGG----UGGGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.