miRNA display CGI


Results 21 - 40 of 142 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5492 3' -63.2 NC_001798.1 + 147062 0.7 0.389022
Target:  5'- gAGGGGCCcccgcaccucgGCGGccgCCCCCuCCgGCGc -3'
miRNA:   3'- gUCCCCGG-----------UGCCaa-GGGGGuGGgUGC- -5'
5492 3' -63.2 NC_001798.1 + 146590 0.71 0.350652
Target:  5'- gCAGacGGGCCGCGGcgCCagCgGCCCACGc -3'
miRNA:   3'- -GUC--CCCGGUGCCaaGGg-GgUGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 146420 0.69 0.404308
Target:  5'- -cGGGGCgagccgggcagagUGCGGagCCCCCggaGCCCGCGg -3'
miRNA:   3'- guCCCCG-------------GUGCCaaGGGGG---UGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 145390 0.73 0.246527
Target:  5'- gAGGGGCgaCGCGGggaaagcgcgCCCCCGCCCGg- -3'
miRNA:   3'- gUCCCCG--GUGCCaa--------GGGGGUGGGUgc -5'
5492 3' -63.2 NC_001798.1 + 143816 0.69 0.41581
Target:  5'- cCGGGcGGCgCGCGGccagccguuggaccaCCCCGCCCACa -3'
miRNA:   3'- -GUCC-CCG-GUGCCaag------------GGGGUGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 140016 0.67 0.556692
Target:  5'- --uGGGCCAgGGUgCCCUCACgCGCc -3'
miRNA:   3'- gucCCCGGUgCCAaGGGGGUGgGUGc -5'
5492 3' -63.2 NC_001798.1 + 137921 0.68 0.464626
Target:  5'- cCGGGcGGcCCGCGccUCCCCCGgCCGCc -3'
miRNA:   3'- -GUCC-CC-GGUGCcaAGGGGGUgGGUGc -5'
5492 3' -63.2 NC_001798.1 + 137304 0.66 0.595079
Target:  5'- gAGGauGGCgGCGGccgUUCCCUCAUCgGCGg -3'
miRNA:   3'- gUCC--CCGgUGCC---AAGGGGGUGGgUGC- -5'
5492 3' -63.2 NC_001798.1 + 136831 0.7 0.358107
Target:  5'- uGGcGGGCCACGa--CCCCCAaCCACGc -3'
miRNA:   3'- gUC-CCCGGUGCcaaGGGGGUgGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 136002 0.67 0.519049
Target:  5'- cCGGGGGCgGggaguCGGUcggcgUCCCCguggaucugUACCCGCGg -3'
miRNA:   3'- -GUCCCCGgU-----GCCA-----AGGGG---------GUGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 134986 0.67 0.516264
Target:  5'- uGGGGGCCuggcccGCGGUgggcgccagggucgUCCUgCcCCCGCGg -3'
miRNA:   3'- gUCCCCGG------UGCCA--------------AGGGgGuGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 134954 0.69 0.413328
Target:  5'- gCGGGGcGCCGCGG--CCaCCCAUgCCGCGu -3'
miRNA:   3'- -GUCCC-CGGUGCCaaGG-GGGUG-GGUGC- -5'
5492 3' -63.2 NC_001798.1 + 134163 0.69 0.438549
Target:  5'- -cGGGGCCgucGCGG--CCgCCCGCgCCGCGa -3'
miRNA:   3'- guCCCCGG---UGCCaaGG-GGGUG-GGUGC- -5'
5492 3' -63.2 NC_001798.1 + 132148 0.72 0.282246
Target:  5'- cCGGGGGCCggcggGCGGggcgCCCCC-CCCGg- -3'
miRNA:   3'- -GUCCCCGG-----UGCCaa--GGGGGuGGGUgc -5'
5492 3' -63.2 NC_001798.1 + 129359 0.72 0.301592
Target:  5'- --cGGGCCugGCGGggCCCCCggACCCGCc -3'
miRNA:   3'- gucCCCGG--UGCCaaGGGGG--UGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 127941 0.68 0.455842
Target:  5'- -cGGGGCCcCGGgcgaaaaggCCCgGCCCGCGu -3'
miRNA:   3'- guCCCCGGuGCCaag------GGGgUGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 127885 0.72 0.300931
Target:  5'- cCGGGGGCCcCgGGUUCCCauuggccccagagCCcCCCACGu -3'
miRNA:   3'- -GUCCCCGGuG-CCAAGGG-------------GGuGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 127128 0.7 0.365673
Target:  5'- cCGGGGGUUugGGaugCCCgCCGCCCugaccACGg -3'
miRNA:   3'- -GUCCCCGGugCCaa-GGG-GGUGGG-----UGC- -5'
5492 3' -63.2 NC_001798.1 + 124512 0.74 0.224853
Target:  5'- gGGGGGCUGCGGgcgugucgUCCCaCACUCGCGu -3'
miRNA:   3'- gUCCCCGGUGCCa-------AGGGgGUGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 123944 0.69 0.447149
Target:  5'- cCGGGGGCCugGuGgcaccUCCCCgGCggCCGCa -3'
miRNA:   3'- -GUCCCCGGugC-Ca----AGGGGgUG--GGUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.