miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5492 5' -53.7 NC_001798.1 + 2532 0.69 0.865962
Target:  5'- gUCGgcggGGCGG-GggGCGcgGCCCCc- -3'
miRNA:   3'- aAGCa---CCGCUaCuuCGCuuUGGGGuc -5'
5492 5' -53.7 NC_001798.1 + 2972 0.66 0.961709
Target:  5'- gUCGgcguGCGgcGggGCGGccggcccgcgGGCCCCGGg -3'
miRNA:   3'- aAGCac--CGCuaCuuCGCU----------UUGGGGUC- -5'
5492 5' -53.7 NC_001798.1 + 3190 0.73 0.644563
Target:  5'- gUCGUcggccccggccGGCGcgGAGGCGGGcgcggcgcucaggcGCCCCAGg -3'
miRNA:   3'- aAGCA-----------CCGCuaCUUCGCUU--------------UGGGGUC- -5'
5492 5' -53.7 NC_001798.1 + 3361 0.69 0.873529
Target:  5'- gUCGUGGCGGUu-GGCGucGCCgCCGu -3'
miRNA:   3'- aAGCACCGCUAcuUCGCuuUGG-GGUc -5'
5492 5' -53.7 NC_001798.1 + 4392 0.73 0.658175
Target:  5'- gUgGUGGUGGUGGugucGGCGggGCgCCGGg -3'
miRNA:   3'- aAgCACCGCUACU----UCGCuuUGgGGUC- -5'
5492 5' -53.7 NC_001798.1 + 14126 0.7 0.824953
Target:  5'- aUCGgGGCGAUGggGUGggGgCaaggCCAGa -3'
miRNA:   3'- aAGCaCCGCUACuuCGCuuUgG----GGUC- -5'
5492 5' -53.7 NC_001798.1 + 15032 0.68 0.901476
Target:  5'- aUUCcUGGCGGgagcgUGggGCGGAuggGCCCgGGg -3'
miRNA:   3'- -AAGcACCGCU-----ACuuCGCUU---UGGGgUC- -5'
5492 5' -53.7 NC_001798.1 + 15291 0.69 0.861316
Target:  5'- -gCGUGGCGGUGGucgcGGCGAccgaaAcguuggcggccgaggGCCCCGGc -3'
miRNA:   3'- aaGCACCGCUACU----UCGCU-----U---------------UGGGGUC- -5'
5492 5' -53.7 NC_001798.1 + 16229 0.69 0.873529
Target:  5'- gUgGgggGGCGGUGggGcCGggGCCCUc- -3'
miRNA:   3'- aAgCa--CCGCUACuuC-GCuuUGGGGuc -5'
5492 5' -53.7 NC_001798.1 + 17136 0.67 0.925527
Target:  5'- --aGUGcGCGGUGAGGCGcGAUUCCGc -3'
miRNA:   3'- aagCAC-CGCUACUUCGCuUUGGGGUc -5'
5492 5' -53.7 NC_001798.1 + 21813 0.66 0.961709
Target:  5'- cUCGgGGCGGagcccgcgggaUGAcGCG-GGCCCCGGg -3'
miRNA:   3'- aAGCaCCGCU-----------ACUuCGCuUUGGGGUC- -5'
5492 5' -53.7 NC_001798.1 + 22353 0.66 0.945126
Target:  5'- gUCGgGGCGGggccgcgcauaaUGcgguuccaccuggGGGCGGAACCCCGGc -3'
miRNA:   3'- aAGCaCCGCU------------AC-------------UUCGCUUUGGGGUC- -5'
5492 5' -53.7 NC_001798.1 + 22952 0.66 0.954122
Target:  5'- -cCGUGcCGAcGAGGCG--GCCCCGGc -3'
miRNA:   3'- aaGCACcGCUaCUUCGCuuUGGGGUC- -5'
5492 5' -53.7 NC_001798.1 + 24014 0.69 0.873529
Target:  5'- -gCGgaGGCGAUGggGUG--GCUCCAGa -3'
miRNA:   3'- aaGCa-CCGCUACuuCGCuuUGGGGUC- -5'
5492 5' -53.7 NC_001798.1 + 26326 0.7 0.807207
Target:  5'- -aCGUGGCGcUGggGCGcGACgCCGu -3'
miRNA:   3'- aaGCACCGCuACuuCGCuUUGgGGUc -5'
5492 5' -53.7 NC_001798.1 + 28857 0.69 0.865962
Target:  5'- ----cGGCGAgGGcggccucggccGGCGGAGCCCCGGa -3'
miRNA:   3'- aagcaCCGCUaCU-----------UCGCUUUGGGGUC- -5'
5492 5' -53.7 NC_001798.1 + 34739 0.67 0.940939
Target:  5'- gUCG-GGCccgGGAGCGggGCggCCCGGg -3'
miRNA:   3'- aAGCaCCGcuaCUUCGCuuUG--GGGUC- -5'
5492 5' -53.7 NC_001798.1 + 36100 0.66 0.945578
Target:  5'- -gCG-GGUGGUGggGgGggGCCCg-- -3'
miRNA:   3'- aaGCaCCGCUACuuCgCuuUGGGguc -5'
5492 5' -53.7 NC_001798.1 + 36306 0.66 0.945578
Target:  5'- -gUGUGGCGgcGggGCGcGGGCCggggCCGGg -3'
miRNA:   3'- aaGCACCGCuaCuuCGC-UUUGG----GGUC- -5'
5492 5' -53.7 NC_001798.1 + 36446 0.69 0.858175
Target:  5'- gUCGcGGCGggGAAG-GAaggaaaGACCCCGGa -3'
miRNA:   3'- aAGCaCCGCuaCUUCgCU------UUGGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.