miRNA display CGI


Results 21 - 40 of 40 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5492 5' -53.7 NC_001798.1 + 44207 0.73 0.658175
Target:  5'- -gCGUGGUGAgGccGCGcuGCCCCAGg -3'
miRNA:   3'- aaGCACCGCUaCuuCGCuuUGGGGUC- -5'
5492 5' -53.7 NC_001798.1 + 45355 0.7 0.785979
Target:  5'- -aCGUGGCGAUcgcGGAGCGGGcccuuggucucuccACCUCGGc -3'
miRNA:   3'- aaGCACCGCUA---CUUCGCUU--------------UGGGGUC- -5'
5492 5' -53.7 NC_001798.1 + 55492 0.67 0.936052
Target:  5'- ----aGGCGA-GAAGCGGGACCgUCGGa -3'
miRNA:   3'- aagcaCCGCUaCUUCGCUUUGG-GGUC- -5'
5492 5' -53.7 NC_001798.1 + 56526 0.7 0.788794
Target:  5'- aUCGUGGCGGUGc--CGggGCgCCCGc -3'
miRNA:   3'- aAGCACCGCUACuucGCuuUG-GGGUc -5'
5492 5' -53.7 NC_001798.1 + 57315 0.67 0.936052
Target:  5'- -cCGUGGCauaacgccaGAUcugGAGGCGGAACUCCGu -3'
miRNA:   3'- aaGCACCG---------CUA---CUUCGCUUUGGGGUc -5'
5492 5' -53.7 NC_001798.1 + 58981 0.69 0.850174
Target:  5'- gUCGgcggccgGGCGAacgcggggGggGCGcggagGAACCCCAGg -3'
miRNA:   3'- aAGCa------CCGCUa-------CuuCGC-----UUUGGGGUC- -5'
5492 5' -53.7 NC_001798.1 + 59108 0.66 0.945578
Target:  5'- -gCGUGGCGGccUGGAgccagagaugcGCGAAcCCCCGa -3'
miRNA:   3'- aaGCACCGCU--ACUU-----------CGCUUuGGGGUc -5'
5492 5' -53.7 NC_001798.1 + 83860 0.66 0.949971
Target:  5'- -gCGcUGGCGGgcccGAGGCGGcGACCCCc- -3'
miRNA:   3'- aaGC-ACCGCUa---CUUCGCU-UUGGGGuc -5'
5492 5' -53.7 NC_001798.1 + 86424 0.66 0.961709
Target:  5'- cUCGaGGCGGaccccGAGGCGcAGCCCgGGg -3'
miRNA:   3'- aAGCaCCGCUa----CUUCGCuUUGGGgUC- -5'
5492 5' -53.7 NC_001798.1 + 97547 0.67 0.940462
Target:  5'- -gCGUGGCGcgGGgacgcccgcgAGCGAGgacggggagcgcgGCCCCGa -3'
miRNA:   3'- aaGCACCGCuaCU----------UCGCUU-------------UGGGGUc -5'
5492 5' -53.7 NC_001798.1 + 101697 0.7 0.807207
Target:  5'- ----aGGCGAguuAGCGGGACCCCAu -3'
miRNA:   3'- aagcaCCGCUacuUCGCUUUGGGGUc -5'
5492 5' -53.7 NC_001798.1 + 101833 0.69 0.865962
Target:  5'- cUCGcGGCGGgggGAGGCGuGggUCCCGGc -3'
miRNA:   3'- aAGCaCCGCUa--CUUCGC-UuuGGGGUC- -5'
5492 5' -53.7 NC_001798.1 + 102061 0.66 0.958033
Target:  5'- -gCGUGGgGGUGGuGGUaGGGCCCCAc -3'
miRNA:   3'- aaGCACCgCUACU-UCGcUUUGGGGUc -5'
5492 5' -53.7 NC_001798.1 + 102393 0.67 0.913397
Target:  5'- gUCGgcGGCGAUGGcccccaccagcgcGGCGAucugGGCCuCCAGg -3'
miRNA:   3'- aAGCa-CCGCUACU-------------UCGCU----UUGG-GGUC- -5'
5492 5' -53.7 NC_001798.1 + 112508 0.68 0.901476
Target:  5'- ---cUGGCGGUGgcGCGAacggGACCCguGg -3'
miRNA:   3'- aagcACCGCUACuuCGCU----UUGGGguC- -5'
5492 5' -53.7 NC_001798.1 + 117508 0.68 0.880868
Target:  5'- gUCGUGGCGGgaaaccggcUGggGCcGGcccAGCCCCu- -3'
miRNA:   3'- aAGCACCGCU---------ACuuCG-CU---UUGGGGuc -5'
5492 5' -53.7 NC_001798.1 + 122355 0.68 0.901476
Target:  5'- aUUCgGUGGCG-UGggGCGGGcgacgcgcccGCCCCc- -3'
miRNA:   3'- -AAG-CACCGCuACuuCGCUU----------UGGGGuc -5'
5492 5' -53.7 NC_001798.1 + 127923 0.67 0.913999
Target:  5'- -aCGUGGgcaaccCGAc--GGCGggGCCCCGGg -3'
miRNA:   3'- aaGCACC------GCUacuUCGCuuUGGGGUC- -5'
5492 5' -53.7 NC_001798.1 + 147226 0.66 0.945578
Target:  5'- -cCGgcgGaGCGcgGggGCcccGggGCCCCGGg -3'
miRNA:   3'- aaGCa--C-CGCuaCuuCG---CuuUGGGGUC- -5'
5492 5' -53.7 NC_001798.1 + 151843 0.74 0.595343
Target:  5'- -gCGgGGCG-UGAGGCGGGACCCCc- -3'
miRNA:   3'- aaGCaCCGCuACUUCGCUUUGGGGuc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.