miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5492 5' -53.7 NC_001798.1 + 122355 0.68 0.901476
Target:  5'- aUUCgGUGGCG-UGggGCGGGcgacgcgcccGCCCCc- -3'
miRNA:   3'- -AAG-CACCGCuACuuCGCUU----------UGGGGuc -5'
5492 5' -53.7 NC_001798.1 + 117508 0.68 0.880868
Target:  5'- gUCGUGGCGGgaaaccggcUGggGCcGGcccAGCCCCu- -3'
miRNA:   3'- aAGCACCGCU---------ACuuCG-CU---UUGGGGuc -5'
5492 5' -53.7 NC_001798.1 + 16229 0.69 0.873529
Target:  5'- gUgGgggGGCGGUGggGcCGggGCCCUc- -3'
miRNA:   3'- aAgCa--CCGCUACuuC-GCuuUGGGGuc -5'
5492 5' -53.7 NC_001798.1 + 3361 0.69 0.873529
Target:  5'- gUCGUGGCGGUu-GGCGucGCCgCCGu -3'
miRNA:   3'- aAGCACCGCUAcuUCGCuuUGG-GGUc -5'
5492 5' -53.7 NC_001798.1 + 24014 0.69 0.873529
Target:  5'- -gCGgaGGCGAUGggGUG--GCUCCAGa -3'
miRNA:   3'- aaGCa-CCGCUACuuCGCuuUGGGGUC- -5'
5492 5' -53.7 NC_001798.1 + 2532 0.69 0.865962
Target:  5'- gUCGgcggGGCGG-GggGCGcgGCCCCc- -3'
miRNA:   3'- aAGCa---CCGCUaCuuCGCuuUGGGGuc -5'
5492 5' -53.7 NC_001798.1 + 28857 0.69 0.865962
Target:  5'- ----cGGCGAgGGcggccucggccGGCGGAGCCCCGGa -3'
miRNA:   3'- aagcaCCGCUaCU-----------UCGCUUUGGGGUC- -5'
5492 5' -53.7 NC_001798.1 + 101833 0.69 0.865962
Target:  5'- cUCGcGGCGGgggGAGGCGuGggUCCCGGc -3'
miRNA:   3'- aAGCaCCGCUa--CUUCGC-UuuGGGGUC- -5'
5492 5' -53.7 NC_001798.1 + 15291 0.69 0.861316
Target:  5'- -gCGUGGCGGUGGucgcGGCGAccgaaAcguuggcggccgaggGCCCCGGc -3'
miRNA:   3'- aaGCACCGCUACU----UCGCU-----U---------------UGGGGUC- -5'
5492 5' -53.7 NC_001798.1 + 36446 0.69 0.858175
Target:  5'- gUCGcGGCGggGAAG-GAaggaaaGACCCCGGa -3'
miRNA:   3'- aAGCaCCGCuaCUUCgCU------UUGGGGUC- -5'
5492 5' -53.7 NC_001798.1 + 58981 0.69 0.850174
Target:  5'- gUCGgcggccgGGCGAacgcggggGggGCGcggagGAACCCCAGg -3'
miRNA:   3'- aAGCa------CCGCUa-------CuuCGC-----UUUGGGGUC- -5'
5492 5' -53.7 NC_001798.1 + 14126 0.7 0.824953
Target:  5'- aUCGgGGCGAUGggGUGggGgCaaggCCAGa -3'
miRNA:   3'- aAGCaCCGCUACuuCGCuuUgG----GGUC- -5'
5492 5' -53.7 NC_001798.1 + 101697 0.7 0.807207
Target:  5'- ----aGGCGAguuAGCGGGACCCCAu -3'
miRNA:   3'- aagcaCCGCUacuUCGCUUUGGGGUc -5'
5492 5' -53.7 NC_001798.1 + 26326 0.7 0.807207
Target:  5'- -aCGUGGCGcUGggGCGcGACgCCGu -3'
miRNA:   3'- aaGCACCGCuACuuCGCuUUGgGGUc -5'
5492 5' -53.7 NC_001798.1 + 56526 0.7 0.788794
Target:  5'- aUCGUGGCGGUGc--CGggGCgCCCGc -3'
miRNA:   3'- aAGCACCGCUACuucGCuuUG-GGGUc -5'
5492 5' -53.7 NC_001798.1 + 45355 0.7 0.785979
Target:  5'- -aCGUGGCGAUcgcGGAGCGGGcccuuggucucuccACCUCGGc -3'
miRNA:   3'- aaGCACCGCUA---CUUCGCUU--------------UGGGGUC- -5'
5492 5' -53.7 NC_001798.1 + 44207 0.73 0.658175
Target:  5'- -gCGUGGUGAgGccGCGcuGCCCCAGg -3'
miRNA:   3'- aaGCACCGCUaCuuCGCuuUGGGGUC- -5'
5492 5' -53.7 NC_001798.1 + 4392 0.73 0.658175
Target:  5'- gUgGUGGUGGUGGugucGGCGggGCgCCGGg -3'
miRNA:   3'- aAgCACCGCUACU----UCGCuuUGgGGUC- -5'
5492 5' -53.7 NC_001798.1 + 3190 0.73 0.644563
Target:  5'- gUCGUcggccccggccGGCGcgGAGGCGGGcgcggcgcucaggcGCCCCAGg -3'
miRNA:   3'- aAGCA-----------CCGCuaCUUCGCUU--------------UGGGGUC- -5'
5492 5' -53.7 NC_001798.1 + 151843 0.74 0.595343
Target:  5'- -gCGgGGCG-UGAGGCGGGACCCCc- -3'
miRNA:   3'- aaGCaCCGCuACUUCGCUUUGGGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.