miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5493 3' -57 NC_001798.1 + 69164 0.66 0.874789
Target:  5'- gGCCgggcggaGCCCGauggcgggcCAGGUGGgggaGGUCGGUGg -3'
miRNA:   3'- -UGG-------UGGGU---------GUCCACCaua-UCGGCCAC- -5'
5493 3' -57 NC_001798.1 + 122223 0.66 0.868203
Target:  5'- gGCUggaCCGCGGGUGGgaagcucUGGCCGGc- -3'
miRNA:   3'- -UGGug-GGUGUCCACCau-----AUCGGCCac -5'
5493 3' -57 NC_001798.1 + 148670 0.66 0.860685
Target:  5'- cACCACCCcCAG--GGUcUGGCCGGc- -3'
miRNA:   3'- -UGGUGGGuGUCcaCCAuAUCGGCCac -5'
5493 3' -57 NC_001798.1 + 22880 0.66 0.860685
Target:  5'- cGCgGCCCGgguuCGGGUGGcacggugGGCCGGa- -3'
miRNA:   3'- -UGgUGGGU----GUCCACCaua----UCGGCCac -5'
5493 3' -57 NC_001798.1 + 138194 0.66 0.845039
Target:  5'- uGCCGCCCuugccgaaccCAGGgagGGUGUGGUCGa-- -3'
miRNA:   3'- -UGGUGGGu---------GUCCa--CCAUAUCGGCcac -5'
5493 3' -57 NC_001798.1 + 122103 0.66 0.843432
Target:  5'- aGCCGCCCgGCGGG-GGgcgcuuugccAGCCGGg- -3'
miRNA:   3'- -UGGUGGG-UGUCCaCCaua-------UCGGCCac -5'
5493 3' -57 NC_001798.1 + 27566 0.67 0.836924
Target:  5'- -gCGCCCGCGGG-GGagcGGCCGGc- -3'
miRNA:   3'- ugGUGGGUGUCCaCCauaUCGGCCac -5'
5493 3' -57 NC_001798.1 + 152061 0.67 0.834454
Target:  5'- cACgGCCCACGGG-GGUcccccgaccgcuuaAgcgGGCCGGg- -3'
miRNA:   3'- -UGgUGGGUGUCCaCCA--------------Ua--UCGGCCac -5'
5493 3' -57 NC_001798.1 + 16221 0.67 0.828624
Target:  5'- cGCCGCCUguGgGGGggcGGUGgGGCCGGg- -3'
miRNA:   3'- -UGGUGGG--UgUCCa--CCAUaUCGGCCac -5'
5493 3' -57 NC_001798.1 + 146013 0.67 0.826099
Target:  5'- cGCCACCCcccaaacagccaagGCGcGGUGGgg-GGCgUGGUGg -3'
miRNA:   3'- -UGGUGGG--------------UGU-CCACCauaUCG-GCCAC- -5'
5493 3' -57 NC_001798.1 + 120793 0.67 0.820146
Target:  5'- cACCACCCGCGGcauGUGGUcGUcGCauauauaGGUGa -3'
miRNA:   3'- -UGGUGGGUGUC---CACCA-UAuCGg------CCAC- -5'
5493 3' -57 NC_001798.1 + 103702 0.67 0.819289
Target:  5'- cCCACCCACGGGgcccgccguuguUGcGUGUccgccgacguccgGGCCGGg- -3'
miRNA:   3'- uGGUGGGUGUCC------------AC-CAUA-------------UCGGCCac -5'
5493 3' -57 NC_001798.1 + 4194 0.67 0.811498
Target:  5'- cCCGCCCGCGGcGUGGUcugcGgcGCUGGc- -3'
miRNA:   3'- uGGUGGGUGUC-CACCA----UauCGGCCac -5'
5493 3' -57 NC_001798.1 + 74845 0.67 0.802688
Target:  5'- aGCCgagACCUGCGGGUccuggaGGUGggggcaguGCCGGUGg -3'
miRNA:   3'- -UGG---UGGGUGUCCA------CCAUau------CGGCCAC- -5'
5493 3' -57 NC_001798.1 + 2458 0.68 0.771635
Target:  5'- aGCCGCCCuGCGGGUcGGggcccucggcgGGCCGGc- -3'
miRNA:   3'- -UGGUGGG-UGUCCA-CCaua--------UCGGCCac -5'
5493 3' -57 NC_001798.1 + 135206 0.68 0.765997
Target:  5'- gGCCGCCCucGCGGGccucgGGga-GGCCGGg- -3'
miRNA:   3'- -UGGUGGG--UGUCCa----CCauaUCGGCCac -5'
5493 3' -57 NC_001798.1 + 140123 0.68 0.756506
Target:  5'- cACCuACUCACGaccGUGGUGUAuuGCUGGUGg -3'
miRNA:   3'- -UGG-UGGGUGUc--CACCAUAU--CGGCCAC- -5'
5493 3' -57 NC_001798.1 + 29889 0.68 0.746905
Target:  5'- gACCACCCggcuGCGGGUugggGGUGgucgcGGgCGGUGg -3'
miRNA:   3'- -UGGUGGG----UGUCCA----CCAUa----UCgGCCAC- -5'
5493 3' -57 NC_001798.1 + 19052 0.68 0.746905
Target:  5'- uACCACCUGUGGGUGGUcgGGgCGGc- -3'
miRNA:   3'- -UGGUGGGUGUCCACCAuaUCgGCCac -5'
5493 3' -57 NC_001798.1 + 17119 0.68 0.737204
Target:  5'- gGCCGCCCGCGaGcGGUAguGCgCGGUGa -3'
miRNA:   3'- -UGGUGGGUGUcCaCCAUauCG-GCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.